Molecular phylogeny and population structure of tideland snails in the genus Cerithidea around Japan

Kojima, Soichi; Kamimura, Satomi; Iijima, Akiko; Kimura, Taeko; Kurozumi, Taiji; Furota, Toshio

doi:10.1007/s00227-005-0183-2

Cited by 43 publications

(42 citation statements)

References 23 publications

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“…In addition, current hydrodynamic regimes (such as deep-sea gaps along Taiwan and the Japanese Archipelago) may have had profound effects on the genetic divergence of marine populations (Kojima et al 2006;Kawane et al 2008). These changes in environmental and geographical regimes are suggested as the mechanism that influenced the population genetic structures of the fishes in the northwest Pacific (Liu et al 2007;Hu et al 2011;Shen et al 2011).…”

Section: Population Genetic Structurementioning

confidence: 99%

Genetic Stock Structure of Terapon jarbua in Taiwanese Waters

et al. 2015

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Over the past century, stock identification, which is crucial for fisheries stock assessments, has relied heavily on intraspecies variations to differentiate management units. In recent years, however, DNA approaches have shed additional light on some aspects of the natural history and ecology of species and stocks. The Crescent Grunter Terapon jarbua is widely distributed across the Indo-Pacific region. It inhabits coastal waters with sandy substrates and tends to aggregate in estuaries. In the present study, we collected 96 individuals of T. jarbua from 10 locations around the shoreline of Taiwan as well as near Guangdong, China. A concatenated sequence (1,753 bp) of mtDNA (cytochrome c oxidase I and cytochrome b) was obtained from all individuals. We discovered two genetically distinct clades (lineages A and B) with different historical demographies occurring sympatrically except at the Yilan collection site, which was dominated by lineage A haplotypes. Connectivity within this region is high according to F ST and AMOVA tests. The genetic variation between the two clades is far below the interspecies threshold for the genus Terapon (0.007 versus 0.3156). Therefore, we suggest that they be considered different genetic stocks from a fisheries management point of view and that future stock reassessment should be conducted based on the genetic information provided in this study. Further large-scale sampling is needed to understand the mechanisms that drive genetic partitioning on regional (Northwest Pacific) and global (Indo-Pacific) scales.

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Section: Population Genetic Structurementioning

confidence: 99%

Genetic Stock Structure of Terapon jarbua in Taiwanese Waters

et al. 2015

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“…And also, these are no identical species in National Center for Biotechnology Information (NCBI) database including 187 haplotypes of genus Cerithidea and in previous researches (Kojima et al 2006, Reid et al 2008. It remains possible that species A might be an undescribed species.…”

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confidence: 95%

“…They were identified based on the morphological characteristics according to Hasegawa (2000). Total DNA was extracted from the foot muscle or columella tissue according to the method by Kojima et al (2006), the chelex extraction method (Li et al 2003), or the DNAzol method with the suggested protocol. Part of the mitochondrial COI gene was amplified by polymerase chain reaction (PCR) using the primers LCO1490 and either Abstract: The phylogenetic relationship among the genus Cerithidea including an unidentified congeneric species referred here as species A collected in Suncheon Bay were inferred from nucleotide sequences of the mitochondrial gene for cytochrome c oxidase subunit I (COI).…”

mentioning

confidence: 99%

“…HCO2198 or COI-6 (Folmer et al 1994, Kojima et al 2006). The conditions for PCR using LCO1490 and COI-6 were according to Kojima et al (2006), and when LCO1490 and HCO2198 were used, the conditions were as follows: incubation at 95°C for 3 min; 35 cycles of incubation at 95°C for 40 s, 45°C for 40 s and 72°C for 60 s, and a final extraction at 72°C for 7 min.…”

mentioning

confidence: 99%

“…The conditions for PCR using LCO1490 and COI-6 were according to Kojima et al (2006), and when LCO1490 and HCO2198 were used, the conditions were as follows: incubation at 95°C for 3 min; 35 cycles of incubation at 95°C for 40 s, 45°C for 40 s and 72°C for 60 s, and a final extraction at 72°C for 7 min. Amplified fragments were treated with ExoSap-IT and directly sequenced using an ABI 3130 genetic analyzer and a Big Dye 3.1 Terminator Cycle Sequencing Reaction Kit (Applied Biosystems, CA, USA).…”

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confidence: 99%

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Molecular diversity of Cerithidea gastropods inhabiting Suncheon Bay, and the Japanese and Ryukyu Islands

Kamimura

Itoh

Ozeki

et al. 2010

Plankton Benthos Res

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Population genetic structure of the neon damselfish (Pomacentrus coelestis) in the northwestern Pacific Ocean

2008

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The population genetic structure of the neon damselWsh (Pomacentrus coelestis) in the northwestern PaciWc Ocean was revealed by the hypervariable control region of the mitochondrial gene (343 bp). In total, 170 individuals were sampled from 8 localities distributed between Taiwan and Japan, and 71 haplotypes were obtained through sequence alignment. High haplotype diversity (h = 0.956 § 0.008) with low nucleotide diversity ( = 0.010 § 0.006) was observed, and the results of the mismatch distribution test suggested that a historical population expansion after a period of population bottleneck might have occurred among P. coelestis populations. Based on the results of the UPGMA tree and AMOVA ( ct = 0.193, P < 0.05) analyses, Wsh populations from eight localities could be divided into two groups: one includes populations from localities around mainland Japan, and the other includes those from Okinawa and southern Taiwan. A genetic break was found between populations from mainland Japan and Okinawa, and this break was congruent with the pattern of phenotypic variations documented in previous studies. This evidence supports the latitudinal variation of reproductive traits among P. coelestis populations likely being genetically based. It is suggested that the changes in sea level and sea surface temperatures during past glaciations might have resulted in population bottlenecks in P. coelestis and the modern populations in the northern West PaciWc are likely the results of recolonization after such events. The Kuroshio Current acts not only as a vehicle for larval transport along its pathway (between populations in southern Taiwan and Okinawa) but also as a barrier for larval dispersal across the Kuroshio axis (between populations in mainland Japan and Okinawa).

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Molecular phylogeny and population structure of tideland snails in the genus Cerithidea around Japan

Cited by 43 publications

References 23 publications

Genetic Stock Structure of Terapon jarbua in Taiwanese Waters

Genetic Stock Structure of Terapon jarbua in Taiwanese Waters

Molecular diversity of Cerithidea gastropods inhabiting Suncheon Bay, and the Japanese and Ryukyu Islands

Population genetic structure of the neon damselfish (Pomacentrus coelestis) in the northwestern Pacific Ocean

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