In recent years, molecular tools have been used to help to elucidate some aspects of genetic diversity in aromatic species, the genetic relationships between diff erent cultivars and comparisons of molecular marker analysis to the chemical composition of plants. In this review, an explanation of the most important techniques involving molecular markers is given. A literature survey on molecular markers is presented, with some examples from aromatic plants and spices. However, understanding what controls fl avour and aroma production in plants is not an easy task to accomplish. Several aspects of plant secondary metabolism, in particular volatiles production in aromatic plants, are still unknown. The route from genomics to proteomics is not well documented, although some research with model plants has already been performed. To address the question of the synthesis of volatiles, two diff erent approaches are possible and summarized in this review: fi rst, the biochemical and genetic approach; and second, approaches involving functional genomics. Finally, a brief survey of bioinformatics resources is presented.