Molecular diversity and phytochemical variability in the Iranian poppy (Papaver bracteatum Lindl.): A baseline for conservation and utilization in future breeding programmes

Qaderi, A; Omidi, Mansour; Pour-Aboughadareh, Alireza; Poczai, Péter; Shaghaghi, Javad; Mehrafarin, A; Nohooji, Majid Ghorbani; Etminan, Alireza

doi:10.1016/j.indcrop.2018.12.079

Cited by 39 publications

(14 citation statements)

References 40 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…In contrast, the average Rp value of the CBDP markers was more than that of the SCoT markers, which indicated the high ability of the CBDP markers to reflect the genetic diversity in T. urartu. These results are in agreement with Heikrujam et al [36], Tiwari et al [9], Etminan et al [16,17,37] and Qaderi et al [19], who reported that SCoT and CBDP markers were more useful for dissecting genetic diversity and structure than other molecular marker techniques.…”

Section: Resultssupporting

confidence: 90%

“…The CAAT box region has a specific pattern of nucleotides with a consensus sequence and is located upstream of the start codon of eukaryotic genes [14]. Due to several advantages such as repeatability, low cost and high polymorphism, these techniques have been successfully applied in genetic diversity studies of many plant species [14][15][16][17][18][19][20].…”

Section: Introductionmentioning

confidence: 99%

See 1 more Smart Citation

Assessment of genetic diversity inTriticum urartuThumanjan ex Gandilyan accessions using start codon targeted polymorphism (SCoT) and CAAT-box derived polymorphism (CBDP) markers

Gholamian

Etminan

Changizi

et al. 2019

Biotechnology & Biotechnological Equipment

Self Cite

View full text Add to dashboard Cite

show abstract

Section: Resultssupporting

confidence: 90%

Section: Introductionmentioning

confidence: 99%

Assessment of genetic diversity inTriticum urartuThumanjan ex Gandilyan accessions using start codon targeted polymorphism (SCoT) and CAAT-box derived polymorphism (CBDP) markers

Gholamian

Etminan

Changizi

et al. 2019

Biotechnology & Biotechnological Equipment

Self Cite

View full text Add to dashboard Cite

show abstract

“…CAAT box–derived polymorphisms (CBDP) and start codon targeted (SCoT) polymorphisms are two new reproducible markers that are based on the short conserved region in plant genes [ 22 , 23 ]. These techniques have been successfully used in genetic analyses in different plant species [ 24 – 32 ]. The present research is focused on the estimation of genetic diversity and population structure in a set of Iranian bread wheat genotypes and two Aegilops species using SCoT and CBDP markers.…”

Section: Introductionmentioning

confidence: 99%

Molecular diversity analysis in hexaploid wheat (Triticum aestivum L.) and two Aegilops species (Aegilops crassa and Aegilops cylindrica) using CBDP and SCoT markers

Ghobadi

Etminan

Mehrabi

et al. 2021

Journal of Genetic Engineering and Biotechnology

Self Cite

View full text Add to dashboard Cite

Background Evaluation of genetic diversity and relationships among crop wild relatives is an important task in crop improvement. The main objective of the current study was to estimate molecular variability within the set of 91 samples from Triticum aestivum, Aegilops cylindrica, and Aegilops crassa species using 30 CAAT box–derived polymorphism (CBDP) and start codon targeted (SCoT) markers. Results Fifteen SCoT and Fifteen CBDP primers produced 262 and 298 fragments which all of them were polymorphic, respectively. The number of polymorphic bands (NPB), polymorphic information content (PIC), resolving power (Rp), and marker index (MI) for SCoT primers ranged from 14 to 23, 0.31 to 0.39, 2.55 to 7.49, and 7.56 to 14.46 with an average of 17.47, 0.34, 10.44, and 5.69, respectively, whereas these values for CBDP primers were 15 to 26, 0.28 to 0.36, 3.82 to 6.94, and 4.74 to 7.96 with a mean of 19.87, 0.31, 5.35, and 6.24, respectively. Based on both marker systems, analysis of molecular variance (AMOVA) indicated that the portion of genetic diversity within species was more than among them. In both analyses, the highest values of the number of observed (Na) and effective alleles (Ne), Nei’s gene diversity (He), and Shannon’s information index (I) were estimated for Ae. cylindrica species. Conclusion The results of cluster analysis and population structure showed that SCoT and CBDP markers grouped all samples based on their genomic constitutions. In conclusion, the used markers are very effective techniques for the evaluation of the genetic diversity in wild relatives of wheat.

show abstract

“…This technique was proposed to be used in conjunction with other DNA fingerprinting techniques for applications such as genetic analysis, and quantitative trait loci mapping, especially in laboratories with a preference for agarose gel electrophoresis [10]. Thus, the ISSR and SCoT markers have been successfully used for quantification of genetic diversity in different plants [17][18][19][20][21][22][23].…”

Section: Introductionmentioning

confidence: 99%

Genetic diversity and variation ofHuperzia serrata(Thunb. ex Murray) Trevis. population in Vietnam revealed by ISSR and SCoT markers

Minh

Tien

Hau

et al. 2019

Biotechnology & Biotechnological Equipment

View full text Add to dashboard Cite

Genetic diversity and variation of four naturally distributed Huperzia serrata populations in Vietnam were analyzed based on the DNA fingerprint data obtained by ISSR and SCoT techniques separately and combined together. Both of ISSR and SCoT markers showed that the genetic diversity in Vietnam was relatively high at population and species level, except for the Hoang Lien population. The genetic diversity parameters of the Hoang Lien population were Nei's gene diversity index (H e) ¼ 0.1436, Shannon index (I) ¼ 0.2161, percentage of polymorphic bands (PPB) ¼ 45.45%; of the Bach Ma population, H e ¼ 0.21, I ¼ 0.33, PPB ¼ 71.97%; of the Ngoc Linh population, H e ¼ 0.20, I ¼ 0.31, PPB ¼ 74.24%; of the Bidoup population, H e ¼ 0.19, I ¼ 0.30, PPB ¼ 74.24%; and at species level in Vietnam, H e ¼ 0.23, I ¼ 0.36, PPB ¼ 100%. The genetic differentiation was high with a value of G ST ¼ 0.19 and the number of migrants was estimated through gene flow as Nm ¼ 2.16 individuals per generation among populations. The results of analysis of molecular variance (AMOVA) indicated that 28 and 72% of the total variation were among and within populations, respectively. The genetic diversity and genetic variation parameters of the investigated populations depended on the type of techniques used for DNA fingerprinting and also on the nature of each population. However, there was a high correlation and general trends among the obtained data sets when using ISSR, SCoT and the combination of these techniques.

show abstract

Molecular diversity and phytochemical variability in the Iranian poppy (Papaver bracteatum Lindl.): A baseline for conservation and utilization in future breeding programmes

Cited by 39 publications

References 40 publications

Assessment of genetic diversity inTriticum urartuThumanjan ex Gandilyan accessions using start codon targeted polymorphism (SCoT) and CAAT-box derived polymorphism (CBDP) markers

Assessment of genetic diversity inTriticum urartuThumanjan ex Gandilyan accessions using start codon targeted polymorphism (SCoT) and CAAT-box derived polymorphism (CBDP) markers

Molecular diversity analysis in hexaploid wheat (Triticum aestivum L.) and two Aegilops species (Aegilops crassa and Aegilops cylindrica) using CBDP and SCoT markers

Genetic diversity and variation ofHuperzia serrata(Thunb. ex Murray) Trevis. population in Vietnam revealed by ISSR and SCoT markers

Contact Info

Product

Resources

About