ABSTRACTTicks are important disease vectors that can cause considerable economic losses by affecting animal health and productivity, especially in tropical and subtropical regions. In this study, we investigated the prevalence and diversity of bacterial and protozoan tick-borne pathogens in ticks collected from the vegetation and cattle in Nigeria by PCR. The infection rates of questing ticks were 3.1% forRickettsiaspecies, 0.1% forCoxiella burnetiiand 0.4% forBorreliaspecies. Other pathogens, such asBabesia,Theileria,Anaplasma, andEhrlichiaspecies, were not detected in ticks from the vegetation. Feeding ticks collected from cattle displayed infection rates of 12.5% forRickettsiaspecies, 14% forCoxiella burnetii, 5.9% forAnaplasmaspecies, 5.1% forEhrlichiaspecies, and 2.9% forTheileria mutans. BabesiaandBorreliaspecies were not detected in ticks collected from cattle. Mixed infections were found only in feeding ticks and mainlyRickettsiaspecies andCoxiella burnetiiwere involved. The diversity of tick-borne pathogens in Nigeria was higher in feeding than in questing ticks, suggesting that cattle serve as reservoirs for at least some of the pathogens studied, in particularC. burnetii. The total estimated herd infection rates of 20.6% for aRickettsia africae-like species, 27% forCoxiella burnetii, and 8.5% forAnaplasma marginale/centralesuggest that these pathogens may have considerable implications for human and animal health.