The HNK-1 carbohydrate, which is recognized by anti-HNK-1 antibody, is well known to be expressed predominantly in the nervous system. The characteristic structural feature of the HNK-1 carbohydrate is 3-sulfoglucuronyl residues attached to lactosamine structures (Gal1-4GlcNAc) on glycoproteins and glycolipids. The biosynthesis of the HNK-1 carbohydrate is regulated mainly by two glucuronyltransferases (GlcAT-P and GlcAT-S) and a sulfotransferase. In this study, we found that GlcAT-S mRNA was expressed at higher levels in the kidney than in the brain, but that both GlcAT-P and HNK-1 sulfotransferase mRNAs, which were expressed at high levels in the brain, were not detected in the kidney. These results suggested that the HNK-1 carbohydrate without sulfate (non-sulfated HNK-1 carbohydrate) is expressed in the kidney. We substantiated this hypothesis using two different monoclonal antibodies: one (anti-HNK-1 antibody) requires sulfate on glucuronyl residues for its binding, and the other (antibody M6749) does not. Western blot analyses of mouse kidney revealed that two major bands (80 and 140 kDa) were detected with antibody M6749, but not with anti-HNK-1 antibody. The 80-and 140-kDa band materials were identified as meprin ␣ and CD13/aminopeptidase N, respectively. We also confirmed the presence of the non-sulfated HNK-1 carbohydrate on N-linked oligosaccharides by multistage tandem mass spectrometry. Immunofluorescence staining with antibody M6749 revealed that the non-sulfated HNK-1 carbohydrate was expressed predominantly on the apical membranes of the proximal tubules in the cortex and was also detected in the thin ascending limb in the inner medulla. This is the first study indicating the presence of the non-sulfated HNK-1 carbohydrate being synthesized by GlcAT-S in the kidney. The results presented here constitute novel knowledge concerning the function of the HNK-1 carbohydrate.Glycosylation is one of the major post-translational protein modifications that play important roles in a variety of cellular functions, including recognition and adhesion. We have been interested in the HNK-1 (human natural killer-1) carbohydrate, which is recognized by anti-HNK-1 monoclonal antibody (1). The carbohydrate is expressed predominantly in the nervous system in a wide range of species, and its expression is spatially and temporally regulated during development of the nervous system (2, 3). The characteristic structural feature of the carbohydrate is a sulfated trisaccharide, HSO 3 -3GlcA1-3Gal1-4GlcNAc 1 (4, 5), and the inner structure, Gal1-4GlcNAc, is commonly found on various glycoproteins and glycolipids. Therefore, glucuronyltransferase(s) and sulfotransferase(s) are supposed to be key enzymes for the biosynthesis of this carbohydrate (6). Recently, we cloned two glucuronyltransferases (GlcAT-P and GlcAT-S) that are involved in the biosynthesis of the HNK-1 carbohydrate from rat, mouse, and human (7-11). To elucidate the function of the HNK-1 carbohydrate, we generated mice with a targeted deletion of the GlcAT...