Colletotrichum trifolii is a fungal pathogen responsible for anthracnose disease of alfalfa. Previously, a serine/threonine protein kinase gene from this fungus (TB3), which is a functional homolog of the Neurospora crassa COT1 kinase, has been isolated in our laboratory and appears to be associated with hyphal elongation and branching. In this report we show that light treatment rapidly induces TB3 expression and hyphal branching frequency. Western analysis showed TB3 localization in both the cytoplasm and nucleus, but not in membranes. Moreover, indirect immunofluorescence indicated that TB3 levels were most abundant in the nucleus. To further evaluate the subcellular distribution of TB3, a TB3::GFP fusion construct was inserted into C. trifolii. Results indicated that the cellular location of TB3 changed during fungal growth and development. Consistent with previous observations, TB3 was localized in both the cytoplasm and the nucleus but was preferentially localized in the nucleus during extended hyphal growth. The amino terminus of TB3 contains two relatively long polyglutamine repeats. Yeast-based assays showed that these polyglutamine tracts can activate transcription. These results suggest that TB3 may be positioned in a signaling cascade regulating proper hyphal growth and development by functioning as a transcription factor.A distinctive feature of filamentous fungi is their mode of growth and development via vegetative propagagules known as hyphae. Hyphae grow in a polarized manner and account, in part, for the foraging success of fungi either as saprophytes or pathogens. Coordinated control of hyphal growth and development in filamentous fungi is achieved by activating intracellular signaling cascades in response to environmental stimuli, including nutrient availability, light, and plant host. In addition to these environmental cues that influence hyphal growth, genetic factors have also been identified. In Neurospora crassa, the serine/threonine protein kinase, COT1, has been shown to be required for hyphal elongation (29). Mutations in cot-1 are temperature sensitive; colonial growth occurs at or above 32°C, while normal radial growth is observed at or below 25°C (17). Moreover, disruption of cot-1 results in severe growth defects as disruptants grow little, if at all. cot-1 expression is also photoinducible, and light illumination increases apical hyphal cell branching frequency (16). Immunoblotting with COT1 antibody detects the COT1 kinase in the cytoplasm, membrane, and nucleus (13).Colletotrichum trifolii is the causal agent of alfalfa anthracnose (1). Pathogenicity of C. trifolii depends on proper growth and appressorium differentiation, which are believed to be regulated through the activation of intracellular signal transduction pathways in response to host stimuli (9). However, our understanding of the genes and biochemical pathways which govern hyphal growth and morphogenesis are not entirely clear. Previously, we cloned and characterized a serine/threonine protein kinase gene, tb3 (3), a...