Molecular Characterization of Indonesian Indigenous Chickens based on Mitochondrial DNA Displacement (D)-loop Sequences

Sulandari, Sri; Zein, Sharif Hussein Sharif; Sartika, Tike

doi:10.4308/hjb.15.4.145

Cited by 37 publications

(35 citation statements)

References 24 publications

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“…The white kedu hens has a white beak. Differences in qualitative characteristics are due to genetoc factor, such as those mentioned by Sulandari et al (2008). The allele frequencies in the local chickens of Indonesia are high for these genetic factors.…”

Section: Beak and Tongue Colormentioning

confidence: 99%

“…Based on their origins, Cemani, black Kedu, white Kedu, and Kampong chickens are derived from a common ancestor the Red junglefowl (Gallus gallus) (Sulandari et al 2008;Alwi et al 2014). The genetic distance between chicken types can affect the phenotypic characteristics like body length and body size (Mariandayani et al 2013).…”

Section: Quantitative Characteristicsmentioning

confidence: 99%

“…According to Sulandari et al (2008), the Cemani, black Kedu, white Kedu, and Balinese (Olagan) chickens serve locally as ornamental chickens, production chickens, and chicken fighters, respectively, the latter because of its strength and body type. Local Indonesian chickens have special phenotypical characteristics; therefore, specific phenotypical character identification is required to as certain the genetic diversity of the local chicken population and for the development of a germplasm.…”

Section: Introductionmentioning

confidence: 99%

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Phenotypic characteristics of Indonesian native chickens

Bugueiro

Pedreira²,

Dieguez

2018

JABB

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This research aimed to describe the phenotypic characteristics of local hen varieties. The study sample consisted of twenty 18 week-old hens of the following types: Cemani, black Kedu, white Kedu, and Balinese (Olagan). They were randomly selected from the "Makukuhan" farm in Kedu Temanggung, Central Java Indonesia. The results, which were analyzed using analysis of variance (ANOVA) test, showed significant differences in the quantitative characteristics of body height, body length, and tarsometatarsus length. No significant differences were found in wing length, beak length, femur length, tibiotarsus length, or body weight. Qualitative characteristics of Cemani hens differed from those of black Kedu, white Kedu, and Balinese (Olagan) hens because of their predominantly black body color. The black Kedu hens share similarities with the white Kedu hens in the colors of the tongue, comb, eyeballs, and soles of the feet. In contrast, their beak color and skin color are similar to those of the Balinese (Olagan) hens. The white Kedu hens have predominantly white feathers, and the Balinese (olagan) hens have neither comb nor neck feathers.

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Section: Beak and Tongue Colormentioning

confidence: 99%

Section: Quantitative Characteristicsmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

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Phenotypic characteristics of Indonesian native chickens

Bugueiro

Pedreira²,

Dieguez

2018

JABB

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“…Islam and Nishibori (2012) reported that some individuals of Bangladesh chicken populations have a relationship with Japanese native and silky chickens, and also with South East Asian populations of China, Cambodia, Laos, Vietnam, Thailand and Indonesia. Srisulandari et al (2008) reported the five distinct clades within Indonesian native chickens. Also they reported 67.…”

Section: Banrjfsmentioning

confidence: 99%

Phylogenetic Analysis of South East Asian Countries Chickens Based on Mitochondrial DNA Variations

Osman

Nishibori

2014

J. Poult. Sci.

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Domestic chickens have long been important to human societies for food, religion, entertainment, and decorative uses, yet the origins and phylogeography of chickens through Asia remain uncertain. In this study, the complete mitochondrial (mtDNA) D-loop sequences were analyzed for a total of 27 individuals of Cambodia (n＝13), Myanmar (n＝6), Bangladesh (n＝3) Red junglefowls (RJFs) and Laos native chickens (n＝5). Sequences of mtDNA D-loop of these chickens were compared with 67 D-loop chicken sequences annotated in the GenBank; White Leghorn, RJFs and other Asiatic chickens to identify the phylogenetic relationship within and among Cambodia, Myanmar, Bangladesh RJFs and Laos native chickens for the conservation and improvement of chicken genetic resources. The nucleotide variation of sequence among 23 haplotypes for within and among populations of Cambodia RJFs, Myanmar RJFs, Bangladesh RJFs and Laos native chickens supported the phenotypic variation of individuals of the populations. The 38, 28, 24 and 23 sites of single nucleotide polymorphism (SNP) in Cambodia, Myanmar, Bangladesh RJFs and Laos native chickens, respectively were observed. All RJFs and Laos native chickens have nucleotide insertion in mtDNA D-loop region comparing with White Leghorn. A phylogenetic tree was constructed using the nucleotide sequences of the complete mtDNA D-loop region of the 28 RJFs, 25 other chicken breeds and the 41 chicken haplotypes. Phylogenetic analysis showed total of 94 individuals those were separated into 8 clades. The phylogenetic analysis showed the close genetic relationship within and between the populations of each country. The genetic information from this study is the initial investigation using these populations in Myanmar, Cambodia, Bangladesh and Laos which may be useful in developing future strategies for conservation and improvement of valuable genetic resource.Key words: Bangladesh, Cambodia, Laos, mtDNA, Myanmar, Red junglefowl J. Poult. Sci., 51: 248-261, 2014 Introduction Chickens are classified as: Galliformes, Phasianidae, Gallus (junglefowl). Domestication resulted the basic changes in behavior, physiology and production of birds, but still there are some similarities between the ancestor and the current chickens (Al-Nasser et al., 2007). It is widely accepted the currently recognized populations of domestic chicken descend from a single ancestor; the Red junglefowl (Gallus gallus; RJF) (Hashiguchi et al., 1981;Okada et al., 1984;Yamashita et al., 1994).One of the first attempts to look for the genealogical origin of the present domestic chicken at mitochondrial DNA (mtDNA) level was undertaken by Akishinonomiya et al. (1994Akishinonomiya et al. ( , 1996. They established the theory of monophyletic origin of the domestic chicken that descended mainly from RJF subspecies of Southeast Asia. This result was supported by the analysis of microsatellite DNAs (Hillel et al., 2003) and single nucleotide polymorphism (SNP) genotypes in a wide range of distant chicken populations (Twito et al., 2007). In add...

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“…[1,2] argued that Indonesia is one of the major chicken domestication centers in the world. Indigenous chickens in Indonesia can be categorized as descript and nondescript chickens [3].…”

Section: Introductionmentioning

confidence: 99%

In-situ Conservation Strategy to Safeguard Sentul Chickens in the Future

Asmara¹,

Anang²,

Widjastuti³

et al. 2017

KLS

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Animal genetic resources such as indigenous chickens are part of biodiversity. Sentul chickens are one of indigenous chickens in Indonesia which are regarded as local to Ciamis District in West Java. It is reported that the population of pure Sentul Chickens are in decline. This study was aimed to find out the current population of pure Sentul chickens in three areas in West Java and to develop a conservation strategy to safeguard Sentul chickens in the future. The study used qualitative method to gather data including literature review and key informant interviews. The informants consisted of a leader of farmer group and managers of breeding centers.The interviews were carried out in Ciamis, Majelengka and Bogor Districts. The data were analyzed by descriptive analysis. The results indicated that population of Sentul chickens in Ciamis are in decline, while population in areas outside Ciamis such as Bogor tend to increase. There is a need to develop an in-situ conservation program in which Ciamis District should be assigned to be the center area to provide pure Sentul chickens in West Java. To support the conservation program, stakeholders such as local government, research institutions, universities and farmer groups play important roles.

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Molecular Characterization of Indonesian Indigenous Chickens based on Mitochondrial DNA Displacement (D)-loop Sequences

Cited by 37 publications

References 24 publications

Phenotypic characteristics of Indonesian native chickens

Phenotypic characteristics of Indonesian native chickens

Phylogenetic Analysis of South East Asian Countries Chickens Based on Mitochondrial DNA Variations

In-situ Conservation Strategy to Safeguard Sentul Chickens in the Future

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