We herein report an optimal modulated hydrothermal (MHT) synthesis of a highly stable zirconium metal‐organic framework (MOF) with an optimum aperture size of 3.93 Å that is favorable for CO2 adsorption. It exhibits excellent CO2 uptake capacities of 2.50 and 5.63 mmol g−1 under 0.15 and 1 bar at 298 K, respectively, which are among the highest of all the pristine water‐stable MOFs reported so far. In addition, we have designed a lab‐scale breakthrough set‐up to study its CO2 capture performance under both dry and wet conditions. The velocity at the exit of breakthrough column for mass balance accuracy is carefully measured using argon with a fixed flow rate as the internal reference. Other factors that may affect the breakthrough dynamics, such as pressure drop and its impact on the roll‐up of the weaker component have been studied in details. © 2017 American Institute of Chemical Engineers AIChE J, 63: 4103–4114, 2017