“…In contrast, the previous results using an analytic model and a homogeneous medium do not vary for a single source-detector distance. 50,51,53 The normalized autocorrelation, 𝑔 1 (𝑟 𝑑 , 𝑟 𝑠 , 𝜏) , varies with each source-detector pair but was visualized (Fig. 2a) for representative measurements at each nearest-neighbor distance (first through sixth nearest neighbors), with the curves denoted as 𝑔 1 (𝑟, 𝜏) with source-detector distance 𝑟 = |𝑟 𝑠 − 𝑟 𝑑 |).…”
Section: Resultsmentioning
confidence: 99%
“…In contrast, the previous results using an analytic model and a homogeneous medium do not vary for a single source-detector distance. 50,51,53…”
Section: Resultsmentioning
confidence: 99%
“…To demonstrate the importance of noise in the overall performance of SCOT imaging, we incorporated system-specific noise models 50 and analyzed measurement SNR and imaging SNR (Fig. 4).…”
Section: Discussionmentioning
confidence: 99%
“…Existing models for SCOS and SCOT represent speckle contrast in terms of optical properties and flow within a medium and simulated measurements incorporate relevant noise sources. 8,50 Forward analytical models for SCOT measurements - with limited analytic, closed-form models 7,8,10 such as using a semi-infinite approximation for solving the diffusion equation - are well established. However, the analytic solutions cannot accommodate the complexity of real-world head anatomy.…”
Section: Discussionmentioning
confidence: 99%
“…We expect inverse solutions that include the noise variance 55 might improve the imaging SNR while allowing the improved localization associated with longer measurements. While our noise models were rigorously developed, 50 the results are specific to instrument details, and additional work remains to validate these models.…”
Traditional methods for mapping cerebral blood flow (CBF), such as positron emission tomography and magnetic resonance imaging, offer only isolated snapshots of CBF due to scanner logistics. Speckle contrast optical tomography (SCOT) is a promising optical technique for mapping CBF. However, while SCOT has been established in mice, the method has not yet been demonstrated in humans - partly due to a lack of anatomical reconstruction methods and uncertainty over the optimal design parameters. Herein we develop SCOT reconstruction methods that leverage MRI-based anatomical head models and finite-element modeling of the SCOT forward problem (NIRFASTer). We then simulate SCOT for CBF perturbations to evaluate sensitivity of imaging performance to exposure time and SD-distances. We find image resolution comparable to intensity-based diffuse optical tomography at superficial cortical tissue depth (~1.5 cm). Localization errors can be reduced by including longer SD-measurements. With longer exposure times speckle contrast decreases, however, noise decreases faster, resulting in a net increase in SNR. Specifically, extending exposure time from 10μs to 10ms increased SCOT SNR by 1000X. Overall, our modeling methods provide anatomically-based image reconstructions that can be used to evaluate a broad range of tissue conditions, measurement parameters, and noise sources and inform SCOT system design.
“…In contrast, the previous results using an analytic model and a homogeneous medium do not vary for a single source-detector distance. 50,51,53 The normalized autocorrelation, 𝑔 1 (𝑟 𝑑 , 𝑟 𝑠 , 𝜏) , varies with each source-detector pair but was visualized (Fig. 2a) for representative measurements at each nearest-neighbor distance (first through sixth nearest neighbors), with the curves denoted as 𝑔 1 (𝑟, 𝜏) with source-detector distance 𝑟 = |𝑟 𝑠 − 𝑟 𝑑 |).…”
Section: Resultsmentioning
confidence: 99%
“…In contrast, the previous results using an analytic model and a homogeneous medium do not vary for a single source-detector distance. 50,51,53…”
Section: Resultsmentioning
confidence: 99%
“…To demonstrate the importance of noise in the overall performance of SCOT imaging, we incorporated system-specific noise models 50 and analyzed measurement SNR and imaging SNR (Fig. 4).…”
Section: Discussionmentioning
confidence: 99%
“…Existing models for SCOS and SCOT represent speckle contrast in terms of optical properties and flow within a medium and simulated measurements incorporate relevant noise sources. 8,50 Forward analytical models for SCOT measurements - with limited analytic, closed-form models 7,8,10 such as using a semi-infinite approximation for solving the diffusion equation - are well established. However, the analytic solutions cannot accommodate the complexity of real-world head anatomy.…”
Section: Discussionmentioning
confidence: 99%
“…We expect inverse solutions that include the noise variance 55 might improve the imaging SNR while allowing the improved localization associated with longer measurements. While our noise models were rigorously developed, 50 the results are specific to instrument details, and additional work remains to validate these models.…”
Traditional methods for mapping cerebral blood flow (CBF), such as positron emission tomography and magnetic resonance imaging, offer only isolated snapshots of CBF due to scanner logistics. Speckle contrast optical tomography (SCOT) is a promising optical technique for mapping CBF. However, while SCOT has been established in mice, the method has not yet been demonstrated in humans - partly due to a lack of anatomical reconstruction methods and uncertainty over the optimal design parameters. Herein we develop SCOT reconstruction methods that leverage MRI-based anatomical head models and finite-element modeling of the SCOT forward problem (NIRFASTer). We then simulate SCOT for CBF perturbations to evaluate sensitivity of imaging performance to exposure time and SD-distances. We find image resolution comparable to intensity-based diffuse optical tomography at superficial cortical tissue depth (~1.5 cm). Localization errors can be reduced by including longer SD-measurements. With longer exposure times speckle contrast decreases, however, noise decreases faster, resulting in a net increase in SNR. Specifically, extending exposure time from 10μs to 10ms increased SCOT SNR by 1000X. Overall, our modeling methods provide anatomically-based image reconstructions that can be used to evaluate a broad range of tissue conditions, measurement parameters, and noise sources and inform SCOT system design.
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