The protection of the wind turbine generator (WTG) required discrimination between internal and parallel WTG faults. Furthermore, it must discriminate the fault of its feeder line and parallel feeder line. This chapter describes the protection of wind turbine generators based on fault current and voltage analysis, which can identify the instantaneous operation, delay operation, or immune operation. A proposed Algorithm based digital relay is presented to provide all the different fault detection in a single unit suitable for internal and external fault protection of wind turbine generator. The main challenge to this scheme is that fault resistance may wrongly operate the scheme in some rare conditions. The phase angle of negative sequence current components determines the type of fault. The algorithm used negative sequence current and voltage to positive sequence current and voltage ratio, which is less than the set value in case of external fault. The fault seniors have been explained using simulation results on the wind turbine generator system modeled in a software environment.