Mitogenome data of Nycticebus coucang insularis Robinson, 1917 (Primate: Lorisidae)

Rovie-Ryan, Jeffrine J.; Gani, Millawati; Gan, Han Ming; Abdullah, Mohd Tajuddin

doi:10.1016/j.dib.2019.104058

Cited by 2 publications

(2 citation statements)

References 7 publications

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“…These reads were further assembled with IDBA-UD using the following parameters: similarity threshold of 98% and minimum and maximum K -values of 80 and 240 bp, respectively ( 35 ). Genome assembly validation was achieved by mapping clean reads onto the acquired mitogenome sequences with Geneious v10.1.3 ( 36 ). Simultaneously, the assembled mitogenome was also confirmed by PCR, which amplified eight overlapping fragments (sizes ranging from 1.8 to 2.5 kb).…”

Section: Methodsmentioning

confidence: 99%

Complete Mitogenome sequencing of the fish louse Argulus japonicus (Crustacea: Branchiura): Comparative analyses and phylogenetic implications

Wang,

Hu,

Wang

et al. 2024

Front. Vet. Sci.

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The fish louse Argulus japonicus, a branchiuran crustacean of the Argulidae family, is attracting increasing attention because of its parasitic tendencies and significant health threats to global fish farming. The mitogenomes can yield a foundation for studying epidemiology, genetic diversity, and molecular ecology and therefore may be used to assist in the surveillance and control of A. japonicus. In this study, we sequenced and assembled the complete mitogenome of A. japonicus to shed light on its genetic and evolutionary blueprint. Our investigation indicated that the 15,045-bp circular genome of A. japonicus encodes 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), and 2 ribosomal RNAs (rRNAs) with significant AT and GC skews. Comparative genomics provided an evolutionary scenario for the genetic diversity of 13 PCGs: all were under purifying selection, with cox1 and nad6 having the lowest and highest evolutionary rates, respectively. Genome-wide phylogenetic trees established a close relationship between species of the families Argulidae (Arguloida) and Armilliferidae (Porocephalida) within Crustacea, and further, A. japonicus and Argulus americanus were determined to be more closely related to each other than to others within the family Argulidae. Single PCG-based phylogenies supported nad1 and nad6 as the best genetic markers for evolutionary and phylogenetic studies for branchiuran crustaceans due to their similar phylogenetic topologies with those of genome-based phylogenetic analyses. To sum up, these comprehensive mitogenomic data of A. japonicus and related species refine valuable marker resources and should contribute to molecular diagnostic methods, epidemiological investigations, and ecological studies of the fish ectoparasites in Crustacea.

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Section: Methodsmentioning

confidence: 99%

Complete Mitogenome sequencing of the fish louse Argulus japonicus (Crustacea: Branchiura): Comparative analyses and phylogenetic implications

Wang,

Hu,

Wang

et al. 2024

Front. Vet. Sci.

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“…The samplings were assisted by the field assistants from the Institute of Biodiversity and Environmental Conservation (IBEC), UNIMAS. A total of ten mist nets were deployed at strategic locations with high vegetation, trees with small trunk diameter and near to the stream or water bodies [16], [17], [18], [19], [20]. A total of 18 individuals were captured, identified, sexed, measured and weighed (Table 2) [18], [19], [20], [21].…”

Section: Experimental Design Materials and Methodsmentioning

confidence: 99%

Partial mtDNA sequencing data of vulnerable Cephalopachus bancanus from the Malaysian Borneo

et al. 2019

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Tarsier is an endangered nocturnal primate in the family Tarsiidae and is an endemic to Sundaic islands of Philippine ( Carlito syrichta ), Sulawesi ( Tarsius tarsier-complex) and Borneo ( Cephalopachus bancanus ). Recent records indicated that most molecular studies were done on the Eastern Tarsier and little information for the other group of tarsiers. Here, we present a partial cytochrome b data set of C. bancanus in Sarawak, Malaysian Borneo. Standard mist nets were deployed at strategic locations in various habitat types. A total of 18 individuals were caught, measured and weighed. Approximately, 2 × 2 mm of tissue samples were taken and preserved in molecular grade alcohol. Out of 18, only 11 samples were screened with partial mtDNA (cytochrome b ) and the DNA sequences were registered in the GenBank (accession numbers: KY794797-KY794807). Phylogenetic trees were constructed with 20 additional mtDNA sequences downloaded from GenBank. The data are valuable for the management authorities to regulate the type of management units for the metapopulation to sustain population genetics integrity of tarsiers in the range countries across the Sunda Shelf.

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Mitogenome data of Nycticebus coucang insularis Robinson, 1917 (Primate: Lorisidae)

Cited by 2 publications

References 7 publications

Complete Mitogenome sequencing of the fish louse Argulus japonicus (Crustacea: Branchiura): Comparative analyses and phylogenetic implications

Complete Mitogenome sequencing of the fish louse Argulus japonicus (Crustacea: Branchiura): Comparative analyses and phylogenetic implications

Partial mtDNA sequencing data of vulnerable Cephalopachus bancanus from the Malaysian Borneo

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