In plant organelles, RNA editing is a post-transcriptional mechanism that converts specific cytidines to uridines in RNA of both mitochondria and plastids, altering the information encoded by the gene. The cytidine to be edited is determined by a cis-element surrounding the editing site that is specifically recognized and bound by a trans-acting factor. All the trans-acting editing factors identified so far in plant organelles are members of a large protein family, the pentatricopeptide repeat (PPR) proteins. We have identified the Organelle Transcript Processing 87 (OTP87) gene, which is required for RNA editing of the nad7-C24 and atp1-C1178 sites in Arabidopsis mitochondria. OTP87 encodes an E-subclass PPR protein with an unusually short E-domain. The recombinant protein expressed in Escherichia coli specifically binds to RNAs comprising 30 nucleotides upstream and 10 nucleotides downstream of the nad7-C24 and atp1-C1178 editing sites. The loss-of-function of OTP87 results in small plants with growth and developmental delays. In the otp87 mutant, the amount of assembled respiratory complex V (ATP synthase) is highly reduced compared with the wild type suggesting that the amino acid alteration in ATP1 caused by loss of editing at the atp1-C1178 site affects complex V assembly in mitochondria.In flowering plants, RNA editing comprises conversion of specific cytidine residues to uridine in both mitochondrial and plastid transcripts. RNA editing occurs most frequently in coding regions of mRNAs, with only few sites found in structural RNAs and introns. In Arabidopsis thaliana, more than 500 sites are edited in mitochondrial transcripts whereas 34 sites are affected in chloroplasts (1-4). The mechanism of plant RNA editing has been extensively studied since the late 1980s, but the identity of the enzyme catalyzing the editing reaction remains unknown. Genetic studies have identified nuclear encoded factors required for the editing of one or more specific cytidines in mitochondrial or chloroplast transcripts of Arabidopsis plants (5-21). All of these protein factors are pentatricopeptide repeat (PPR) 6 proteins, a large family of over 450 RNA-binding proteins in Arabidopsis, the majority of which are thought to be targeted to mitochondria or chloroplasts (22,23). All of the organelle editing factors reported to be required for editing of specific sites are members of the E and DYW subclasses of the PPR family. An exception may be the P class protein PPR596, which when disabled increases editing at several mitochondrial sites (24). The distinctive plant-specific C-terminal DYW domain of most of these proteins correlates phylogenetically with plant organelle RNA editing (25,26). These PPR proteins are thought to play the role of trans-acting specificity factors in the current model of RNA editing in plant organelles. In this model, a protein trans-factor specifically binds a cis-element in the vicinity of the editing site, facilitating the access of a putative RNA editing enzyme (27,28). The proof that these genetica...