Background and aims Aluminum (Al)-induced citrate exudation has been identified as an important Alresistance mechanism in soybean. Salicylic acid (SA) is a crucial signal molecule modulating numerous environment stresses in plants. This study was to investigate the role of SA in Al-induced citrate exudation from soybean roots. Methods HPLC was used to test the Al-induced endogenous SA changes, effect of exogenous SA / an inhibitor of SA biosynthesis paclobutrazol (PAC) on Al-induced citrate efflux. The activity / transcriptional expression of mitochondrial aconitase (ACO) and a putative citrate transporter gene Gm-MATE1 were examined by an enzyme method or qRT-PCR. Results Al stress caused increase of endogenous free-SA and conjugated SA (SAG). Exogenous SA enhanced the amount of Al-induced citrate secretion from roots, decreased the Al accumulation in root apices and alleviated the Al-induced inhibition of root elongation. PAC decreased the Al-induced enhancement of endogenous free SA and reduced the amount of citrate exudation. SA and Al together treatment further decreased mitochondrial aconitase (ACO) activity and enhanced the transcriptional expression of Gm-MATE1compared to the sole Al treatment. Conclusions Al-induced SA production may act as an early signal to regulate the metabolism and transportation of citrate in soybean roots.