Mitochondrial control region sequences from a Vietnamese population sample

Irwin, Jodi A.; Saunier, Jessica L.; Strouss, Katherine M.; Diegoli, Toni M.; Sturk, Kimberly A.; O’Callaghan, Jennifer; Paintner, Carla D.; Hohoff, Carsten; Brinkmann, B.; Parsons, Thomas J.

doi:10.1007/s00414-007-0205-3

Cited by 44 publications

(54 citation statements)

References 27 publications

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“…We referred to the classification trees proposed by Palanichamy et al [ Table S1. The M7b1 haplotype has been found throughout East and Southeast Asia in the Korean (0.3%) [18][19][20][21], Chinese (1.8%) [22][23][24][25][26][27][28][29], Japanese (0.15%) [5,9,[30][31][32][33][34][35], Thai (1.9%) [36], Singapore Malay (2.4%) [3], Southern Chinese Daic and Austro-Asiatic (7.7%) [37], Vietnamese (6.95%) [38], Aboriginal Taiwanese (3.3% and 0.74%) [39,40], and Island Southeast Asian populations (1.4%) [14,15,41], but not in the Aboriginal Malay population [14,41]. Of the present M7b1 individuals, two had the intergenic COII/ tRNALys 9-bp deletion.…”

Section: Phylogenetic Studiesmentioning

confidence: 99%

MtDNA control region sequence polymorphisms and phylogenetic analysis of Malay population living in or around Kuala Lumpur in Malaysia

et al. 2009

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Control region polymorphisms in the mitochondrial DNA of 124 unrelated individuals from the Malay population living in or around Kuala Lumpur in Malaysia were investigated and phylogenetic haplogroup lineages were determined. The intergenic COII/tRNALys 9-bp deletion, 3010 and 5178 mutations, and several coding region polymorphisms were examined to discriminate some phylogenetic haplogroups. Sequence comparison of the control regions led to the identification of 117 mitochondrial haplotypes, in which 103 types were observed in only one individual and the other nine types were shared by more than two individuals. Gene diversity was estimated to be 0.997. Phylogenetic haplogroup determination revealed that the gene pool of the modern Malay population in Malaysia consisted mainly of southeast Asian, east Asian, unidentified and unique, and aboriginal southeast-specific haplogroups. These results suggest a multi-original nature for the modern Malay population. The present database may help not only in personal identification but also in determining geographic origin in forensic casework in Malaysian, Southeast Asian and East Asian populations.

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Section: Phylogenetic Studiesmentioning

confidence: 99%

MtDNA control region sequence polymorphisms and phylogenetic analysis of Malay population living in or around Kuala Lumpur in Malaysia

et al. 2009

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“…In the phylogenetic analysis, the haplogroup motif and private mutations were confirmed by sequencing of additional PCR products and checking against our own previously established database [5] and databases reported by others [10], even when there was little doubt as regards to their accuracy [5,10]. Control sequence data have been submitted to the EMPOP database (www.empop.org) [27,28].…”

Section: Pcr Amplification and Sequencing Of Control Regionmentioning

confidence: 99%

Phylogenetic classification of Japanese mtDNA assisted by complete mitochondrial DNA sequences

2008

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We investigated control and coding region polymorphisms in mitochondrial DNA (mtDNA) in 100 unrelated individuals from a Japanese population and determined the basal phylogenetic haplogroup lineages in all samples under updated information. Many of the basal phylogenetic haplogroup lineages assigned on East Asian mtDNA haplogroups corresponded to those previously established. However, new haplogroup lineages such as M7a2a, M7a2b, M7a2*, M7c1b, M11b2*, G2b*, D4c1b1a, D4g2b, A4*, A9, N9b*, B4d1, B4d2, and F1e were identified and established by complete sequencing. Although sequence comparison of the 1.15-kb control region identified 84 mitochondrial haplotypes, examination of coding region polymorphisms increased the total number of haplotypes to 91. Determination of the basal haplogroup lineages increased the discrimination power of mtDNA polymorphisms for personal identification and their usefulness in determining geographic origin in forensic casework in Japanese and other East Asian populations.

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“…A homology search (BLAST search) was conducted using the mtDNA data samples obtained from the East-Asian populations in [59][60][61][62][63][64][65][66][67][68][69][70][71][72] The sequence type of individual no. 913 did not correspond to that of the modern East-Asian populations.…”

Section: Resultsmentioning

confidence: 99%

Mitochondrial DNA analysis of Yayoi period human skeletal remains from the Doigahama site

et al. 2009

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We analyzed the mitochondrial DNA extracted from 14 human skeletal remains from the Doigahama site in Japan to clarify the genetic structure of the Doigahama Yayoi population and the relationship between burial style and kinship among individuals. The sequence types obtained in this study were compared with those of the modern Japanese, northern Kyushu Yayoi and ancient Chinese populations. We found that the northern Kyushu Yayoi populations belonged to the groups that include most of the modern Japanese population. In contrast, most of the Doigahama Yayoi population belonged to the group that includes a small number of the modern Japanese population. These results suggest that the Doigahama Yayoi population might have contributed less to the formation of the modern Japanese population than the northern Kyushu Yayoi populations. Moreover, when we examined the kinship between individuals in the Doigahama site, we found that the vicinal burial of adult skeletons indicated a maternal kinship, although that of juvenile skeletons did not. The vicinal burial style might have been influenced by many factors, such as paternal lineages, periods and geographical regions, as well as maternal lineages. In addition, skeletons considered to be those of shamans or leaders had the same sequence types. Their crucial social roles may have been inherited through maternal lineage.

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Mitochondrial control region sequences from a Vietnamese population sample

Abstract: Entire mitochondrial control region data were generated for 187 individuals from Vietnam. These samples have been previously typed for 16 autosomal short-tandem repeats (STRs) [1].

Cited by 44 publications

References 27 publications

MtDNA control region sequence polymorphisms and phylogenetic analysis of Malay population living in or around Kuala Lumpur in Malaysia

MtDNA control region sequence polymorphisms and phylogenetic analysis of Malay population living in or around Kuala Lumpur in Malaysia

Phylogenetic classification of Japanese mtDNA assisted by complete mitochondrial DNA sequences

Mitochondrial DNA analysis of Yayoi period human skeletal remains from the Doigahama site

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