The chromosome 10q region has recently received a great deal of attention in late-onset Alzheimer's disease (LOAD), given the growing evidence of linkage to LOAD, or to A-beta levels, reported by several groups. In a recent paper we reported evidence of linkage in this region in our subset of the NIMH AD Genetics Initiative pedigrees, approaching genome-wide significance (non-parametric LOD score = 3.27), when only families with maternal disease origin were analyzed [1]. We have now extended this work, using an independent subset of NIMH AD pedigrees from the University of Alabama at Birmingham (UAB), and show further evidence of linkage using parent-of-origin information. As in our Hopkins sample, maternal but not paternal pedigrees show significantly increased linkage in the chromosome 10q region compared to the unstratified sample. Combining data from our previous fine-mapping work on this region and five new markers genotyped in all pedigrees results in a non-parametric LOD score of 3.73 in the same region, a value that reaches genome wide significance for linkage, with an empirical p value = 0.003. These results support our earlier findings and narrow the region of interest. In combination with findings from other groups, these results provide further evidence that this chromosome 10 region harbors a gene implicated in LOAD, and our use of parent-of-origin information has been useful in further narrowing the region of interest.
Keywordslinkage; Alzheimer's disease; human chromosome 10; genetic imprinting Recent genome-wide scans in samples of late-onset Alzheimer's disease (LOAD) families have reported linkage to LOAD or A-beta levels in a region close to the centromere of chromosome 10q, roughly 60 to 90 cM from the p-terminus, [2][3][4][5][6][7] although no gene has been definitively identified. Efforts to replicate and further fine-map this LOAD locus may be limited by the existence of heterogeneity in LOAD family samples. With this in mind, we have focused on potentially important phenotypes to improve linkage and fine-mapping signals. Given reports of excess maternal transmission of Alzheimer's disease as well as differential effects for mitochondrial haplogroups, [8][9][10][11]
NIH-PA Author ManuscriptNIH-PA Author Manuscript NIH-PA Author Manuscript is parental origin of disease. In a previous report, we showed that evidence of linkage to this chromosome 10q region is specific to families with an affected mother in our set of JHU families initially collected as part of the 3-site NIMH Genetics Initiative. Those with an affected father showed no evidence of linkage to this region [1]. This parent-of-origin stratified analysis provided much stronger evidence of linkage to the chromosome 10q region, and a narrower 1-LOD interval, than analysis of the unstratified JHU data set, or the overall 3-site NIMH sample, and the results continued to improve upon fine-mapping (nonparametric LOD score = 3.27). This encouraged the use of parent-of-origin information in pursuing this chromosome 10 AD locus.I...