The cashmere goat (Capra hircus) is famous for the fine quality cashmere wool. The cashmere is produced by secondary hair follicle that the growth shows seasonal rhythm. Thus, in this study, the skin of cashmere goat was selected as a model to illustrate the circannual rhythm of skin. The whole length skin transcriptome mixed from selected four months was obtained by PacBio single-molecule long-read sequencing (SMRT) technology. We generated 82,382 high quality non-redundant transcripts belonging to 193,310 genes, including 4,237 novel genes. Other 39 skin transcriptomes sampled from Dec. 2014 to Dec. 2015 were sequenced by Illumina Hi-Seq2500, we found 980 genes were differentially expressed. Of these genes, 403 seasonal rhythm genes (SRGs) were expressed and exhibited a seasonal pattern in skin. The results also showed that miRNAs were differentially expressed as the daylight length changed throughout a year. Some SRG genes related to the hormone secretion and eyes morphogenesis were enriched in skin. These genes gradually increased their expression level under short light, reached the peak near the summer solstice, and then began to decline. We found that the expression of Dio1 gene may be affected by the photoperiod that induces transformation from the inactive T4 to active thyroid hormone T3 in the skin and led to the difference between the skin circannual rhythm and the core circannual rhythm. Furthermore, the skin expressed eye morphogenesis-related genes and miRNAs, which suggested some cells in the skin could have the potential of light sensitivity. These results revealed that SRGs could regulate the downstream gene expression and physiological process in the skin to adapt to the season change. (SCN ) is common in fish [4, 5]. Miki Tanioka et al. first found fluctuating biomolecular clocks in the skin of mice [6]. However, subsequent studies found that both rat dermal fibroblasts [7] and human keratinocytes cultured in vitro have the same rhythm as the peripheral biological clock, and the external environment (drugs, serum) can affect the biological clock of cells cultured in vitro[8-10]. The circadian clocks of individual cells cultured in vitro are controlled by themselves, and the circadian clocks can be transmitted to the progeny cells through the process of cell division and proliferation [11]. Different types of cells in the skin have different biological clockphases. The whole biological clock in the skin is formed by the coordination of various types of cell biological clock genes [12]. Therefore, the biological clock in the skin is very complex and has memory potential, which is easily affected by light.The economic performance of livestock is mostly related to seasonal rhythm, especially the animals living in the temperate zone. Animals rely on environmental cues to judge the coming season, in order to synchronously change physiological conditions and phenotypic behavior along with environmental condition alterations, It is generally accepted that mammals perceive the light and darkness of the ...