Replication of mini F plasmid requires the plasmid-encoded RepE initiator protein and several host factors including DnaJ, DnaK, and GrpE, heat shock proteins of Escherchia coli. The RepE protein plays a crucial role in replication and exhibits two major functions: initiation of replication from the origin, ori2, and autogenous repression of repE transcription. One of the mini-F plasmid mutants that can replicate in the dnaj-defective host produces an altered RepE (RepE54) with a markedly enhanced initiator activity but little or no repressor activity. RepE54 has been purified from cell extracts primarily in monomeric form, unlike the wild-type RepE that is recovered in dlmeric form. Gel-retardation assays revealed that RepE54 monomers bind to ori2 (direct repeats) with a very high efficiency but hardly bind to the repE operator (inverted repeat), in accordance with the properties of RepE54 in vivo. Furthermore, the treatment of wild-type RepE dimers with protein denaturants enhanced their binding to ori2 but reduced binding to the operator: RepE dimers were partially converted to monomers, and the ori2 binding activity was uniquely associated with monomers. These results strongly suggest that RepE monomers represent an active form by binding to ori2 to initiate replication, whereas dimers act as an autogenous repressor by binding to the operator. We propose that RepE is structurally and functionally differentiated and that monomerization ofRepE dimers, presumably mediated by heat shock protein(s), activates the initiator function and participates in regulation of mini-F DNA replication.The mini-F plasmid, derived from the F (fertility) factor, replicates as a low-copy plasmid (one to two copies per host chromosome) in Escherichia coli (1, 2). The plasmid-encoded RepE initiator protein plays an essential and a specific role in initiating replication from the origin, ori2 (3-6). RepE exhibits two major functions: initiation of DNA replication from ori2 (initiator function) and autogenous repression of repE transcription (repressor function) (7,8). These functions of RepE require its binding to the four 19-bp direct repeat sequences (iterons) found within ori2 and to the repE promoter/operator, which contains an inverted repeat sequence (9-13); the half-sequence (10 bp) of the latter is similar (8-bp matches) to the 19-bp repeats (14). RepE has been purified as a dimer in several laboratories (11-13) and its binding to ori2 iterons and the operator was demonstrated by using DNase I footprinting (9, 10) and gel-retardation (10-13) assays. Thus, RepE dimers have been thought to be involved in binding to both DNA regions, but the structural basis for each of the specific functions of RepE remained undetermined.Besides RepE, several host factors including those involved in chromosomal DNA replication are required for mini-F plasmid replication. In particular, the heat shock oa factor (v.32), which is essential for transcription of repE (8,15), and a subset of heat shock proteins (DnaJ, DnaK, and GrpE) actively...