Microsatellite Markers for Bearded Capuchins (Sapajus libidinosus): Transferability and Characterization

Abstract

Natural Sapajus libidinosus populations are in continuous decline due to fragmentation, habitat loss, and the illegal pet trade. They live in Caatinga scrub forests, which already lost over 50% of their original cover. The lack of studies on S. libidinosus population genetics means that we do not know how they are being affected by this striking habitat loss and other anthropogenic disturbances. Polymorphic markers are not available for the study of S. libidinosus diversity and population genetics. Thus, here we aimed to test the transferability of 14 microsatellite markers to S. libidinosus. These microsatellites were previously isolated from Cebus capucinus (white-faced capuchin), species belonging to the same subfamily (Cebinae) as the study species. We found that six of the tested microsatellite markers (tetra-nucleotide) were cross-amplified in our target species. All loci were polymorphic. The number of alleles varied from 4 to 7, and the expected heterozygosity ranged from 0.588 to 0.869. The microsatellite markers transferred to S. libidinosus and characterised in our study will be valuable tools to evaluate the genetic variability of both wild and captive populations. They will considerably reduce the costs of microsatellite isolations, helping to prioritise currently limited research and conservation budgets in Brazil.

Recently Integrated Alu Elements in Capuchin Monkeys: A Resource for Cebus/Sapajus Genomics

“…In addition, some species in both genera are considered Endangered such as S. robustus [10], or Critically Endangered such as C. kaapori [11], making it essential to have reliable taxonomic, genetic markers for effective conservation efforts. A recent study conducted on populations of S. libidinosus, a species considered "Near Threatened" [12], emphasized that there is currently a lack of developed genetic systems available to study capuchin population and conservation genetics [13]. Primate specific Alu retrotransposons are well-established diagnostic genetic markers for the study of population genetic and phylogenetic relationships [15][16][17][18][19][20][21][22][23][24][25][26][27][28][29][30][31].…”