It is two years now
but the world is still struggling against COVID-19
due to the havoc created by the SARS-CoV-2 virus and its multiple
variants. Considering this perspective, in this work, we have hypothesized
a new approach in order to identify potential regions in SARS-CoV-2
similar to the human miRNAs. Thus, they may have similar consequences
as caused by the human miRNAs in human body. Therefore, the same way
by which human miRNAs are inhibited can be applied for such potential
regions of virus as well by administering drugs to the interacting
human proteins. In this regard, the multiple sequence alignment technique
Clustal Omega is used to align 2656 human miRNAs with the SARS-CoV-2
reference genome to identify the potential regions within the virus
reference genome which have high similarities with the human miRNAs.
The potential regions in virus genome are identified based on the
highest number of nucleotide match, greater than or equal to 5 at
a genomic position, for the aligned miRNAs. As a result, 38 potential
SARS-CoV-2 regions are identified consisting of 249 human miRNAs.
Among these 38 potential regions, some top regions belong to nucleocapsid,
RdRp, helicase, and ORF8. To understand the biological significance
of these potential regions, the targets of the human miRNAs are considered
for KEGG pathways and proteinâprotein and drugâprotein
interaction analysis as the human miRNAs are similar to the potential
regions of SARS-CoV-2. Significant pathways are found which lead to
comorbidities. Subsequently, drugs like emodin, bicalutamide, vorinostat,
etc. are identified that may be used for clinical trials.