Microrna (mir) 15a-5p can promote ischemia/reperfusion (i/r)-induced apoptosis of cerebral vascular endothelial cells, which is inhibited by long non-coding rnas (lncrnas). The present study investigated the potential of lncrnas targeting mir-15a-5p to regulate oxygen-glucose deprivation and reoxygenation (oGd-r)-induced apoptosis of human brain microvascular endothelial cells (hBMecs). hBMecs were transfected with or without mir-15a-5p or its mutant, together with p-small nucleolar rna host gene 16 (SnHG16) or its mutant. Following oGd-r, proliferation, apoptosis and mir-15a-5p, SnHG16 and Bcl-2 expression levels were determined using MTT, flow cytometry, reverse transcription-quantitative Pcr or western blotting. The potential interaction of SnHG16 with mir-15a-5p was analyzed by pull-down, luciferase and immunoprecipitation assays. oGd-r induced apoptosis of hBMecs and increased mir-15a-5p expression levels in a time-dependent manner. mir-15a-5p overexpression decreased the proliferation of hBMecs and promoted apoptosis by decreasing Bcl-2 expression levels. SnHG16 was pulled-down by mir-15a-5p and anti-Ago2. miR-15a-5p overexpression significantly decreased SnHG16-regulated luciferase activity and hBMec survival by increasing apoptosis. SnHG16 overexpression decreased mir-15a-5p expression levels in hBMecs. SnHG16 gradually decreased following oGd-r and its overexpression decreased mir-15a-5p expression levels and promoted the proliferation of hBMecs by decreasing apoptosis. SnHG16 enhanced Bcl-2 expression levels in hBMecs, which was abrogated by mir-15a-5p. Bioinformatics suggest that SnHG16 may antagonize the binding of mir-15a-5p to the 3'uTr of Bcl-2 mrna. These findings suggest that SnHG16 may protect hBMecs from oGd-r-induced apoptosis by antagonizing the mir-15a-5p/bcl-2 axis. Thus, targeting SnHG16-based mechanisms may provide novel therapeutic strategies for treatment of ischemic stroke.