Timing and habitat preferences for settlement of juvenile fishes were investigated at the Marine Protected Area (MPA) of Torre Guaceto (SE Adriatic Sea) from April 2005 to March 2006. Data were obtained by visual census (on a fortnightly basis) in 10 habitat types identified within the depth range 0-6 m. A total of 22 taxa of juvenile fish was recorded: juveniles of 14 taxa were analysed for settlement timing and habitat preferences, whereas the other 8 taxa were only occasionally observed. Diplodus vulgaris and Sarpa salpa showed two settlement peaks, while the other 12 species displayed a single annual peak. Most species (10 out of 14) settled between late spring and early autumn. Juvenile labrids and Oblada melanura were mostly associated with exposed shallow rocks, while Diplodus sargus, D. vulgaris, D. puntazzo and S. salpa chiefly settled in shallow sheltered coves. Juveniles of Chromis chromis were found in sublittoral rocks and Posidonia oceanica beds. Spondilyosoma cantharus, Diplodus annularis and Dicentrarchus labrax mostly associated to P. oceanica and small-sized seagrasses for settlement, while Mullus surmuletus chiefly used sublittoral sands. This study provides evidence of clear coherence during settlement of many fishes in terms of habitat for settlement, while some discrepancy was found in terms of timing across the year. In addition, this study provided suggestive evidence of the potential of the MPA, relative to the habitats included within its borders, in hosting juvenile fish stages and thus contributing to sustain local diversity of the coastal fish fauna. Similar data would deserve to be properly considered to design MPAs and refine conservation targets.