Subsurface
biological processes, such as biofilm development, modify
flow and permeability in fractured rocks, greatly impacting energy
production or treatment efficiencies. This study aims to understand
biological–hydrological interactions at a bench scale during
the progression and treatment of souring (microbially mediated sulfide
production). Few bench-scale studies investigate the role of a biofilm
on the flow and permeability evolution, sulfidogensis, and nitrate
treatment efficacy in fractured rocks. Our experiment consisted of
three sandstone columns that represent differing fracture characteristics
due to the mode of fracture initiation: one column with no fracture
(as a control), one column with a sawcut fracture, and a third column
with a fracture induced by Brazilian loading (tensile). We seek to
understand the effects of the biofilm-permeability feedback on flow
and nutrient transport characteristics of fractured rocks; specifically,
we (1) demonstrate how fracture geometries impact the development
of the biomass-permeability feedback within the rock fractures and
(2) observe the souring trajectory and effects of nitrate treatment.
Observed permeability trends demonstrated that bioclogging modified
the flow properties of fractured columns such that they became hydrologically
similar to those of the control column. While fractures were initially
the main sites of sulfate reduction, when fractures were clogged,
the flow in the fractured columns transitioned from a fracture-dominated
flow to a matrix-dominated flow, impacting the delivery of an electron
acceptor/donor to the microbial population, reducing sulfate reduction
rates. Experimental data also demonstrated two distinct stages in
the biofilm-permeability development. During the initial biofilm development
stage, the growing microbial population had increased reaction rates
but decreased permeability, i.e., a negative correlation between reaction
rates and permeability. In the later stage, when the biofilm had clogged
the columns, a series of biofilm shedding and regrowth directly led
to reopening and clogging of the flow channels, affecting microbial
accessibility to limiting nutrients. As such, a positive correlation
between reaction rates and permeability was observed in this later
stage. Post experimental measurements of surface elevations of the
fractured surfaces revealed that surface elevations in the sawcut
column were lower and more evenly distributed than the surface elevations
in the tensile column where the more unevenly fractured surfaces potentially
better supported the microbial establishment.