Microbial biotechnology for bioprospecting of microbial bioactive compounds and secondary metabolites econdary metabolites and bioactive compounds produced by beneficial soil microbiomes, plant microbiomes and extremophilic microbiomes are of great significance for agriculture, industry and humans welfare. Microbial bioactive compounds and secondary metabolites are broadly used as active ingredients in medicine, in agriculture, and in food additives [1]. Metabolism is the amount of life-sustaining chemical transformations in the cells of organisms, and metabolic intermediates are called metabolites (small molecules). Among the metabolites, the primary microbial metabolite (Ethanol, amino acids and lactic acid) is necessary for growth, reproduction and development of organisms/ producer, whereas secondary metabolites (pigments and antibiotics) produced by microorganisms are useful for other living organisms for their enhanced metabolic processes [2, 3]. The microbial secondary metabolites are useful for human welfare as these metabolites are being used in diverse biological processes in agriculture, medicines, food industry, chemical industry and related fields. Archaea, bacteria and eukarya are three domain and microorganisms from these domain has been reported and characterized for production of potential low molecular weight natural substances and their uses in wide ranges of applications pharmaceuticals, food, agrochemical, and industries [4]. Considering the various studies of microbial bioactive compounds and secondary metabolites, it can be concluded that these microbes belongs to different phylum namely Rhodophyta,