2018
DOI: 10.1016/j.agwat.2017.10.014
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Microbial-based soil quality indicators in irrigated and rainfed soil portions of Mediterranean olive and peach orchards under sustainable management

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Cited by 26 publications
(24 citation statements)
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“…qPCR was performed in triplicate to evaluate bacterial 16S rRNA gene copy numbers using an Applied Biosystems 7500 detection system (Applied Biosystems, Foster City, CA, USA) with 341 primer pairs, forward (5 -CCTACGGGNGGCWGCAG-3 ) and 785 primer pairs, reverse (5 -GACTACHVGGGTATCTA ATCC-3 ) [26]. The reaction mixture (20 µL) and amplification conditions were performed based on the methods of Pascazio et al [27]. Reference strain DNA of Azospirillum irakense [28] was used to create the standard curve and the gene copy number in the samples was calculated using the regression equation that related the cycle threshold (Ct) value to the number of copies in the standard curve [29].…”
Section: Real-time Quantitative Pcr Analysis (Qpcr)mentioning
confidence: 99%
“…qPCR was performed in triplicate to evaluate bacterial 16S rRNA gene copy numbers using an Applied Biosystems 7500 detection system (Applied Biosystems, Foster City, CA, USA) with 341 primer pairs, forward (5 -CCTACGGGNGGCWGCAG-3 ) and 785 primer pairs, reverse (5 -GACTACHVGGGTATCTA ATCC-3 ) [26]. The reaction mixture (20 µL) and amplification conditions were performed based on the methods of Pascazio et al [27]. Reference strain DNA of Azospirillum irakense [28] was used to create the standard curve and the gene copy number in the samples was calculated using the regression equation that related the cycle threshold (Ct) value to the number of copies in the standard curve [29].…”
Section: Real-time Quantitative Pcr Analysis (Qpcr)mentioning
confidence: 99%
“…In March and June, the soil nitrate content was higher in R soil portions, compared to I, with no significant differences in October. A localized irrigation system reduces the wetted soil portion explored by roots for water and nutrient uptake, increasing nutrient efficiency (Pascazio et al, 2018). Indeed, in order to have an optimized nutrition management under localized irrigation, it is necessary to consider only the wetted soil volume along the rows, in which the main roots are present, and to exclude the I soil portion.…”
Section: Soil Nitrates Monitoringmentioning
confidence: 99%
“…Soil micro-organisms can increase nutrients availability through the processes of soil N and C mineralization, with a direct effect on the soil quality (Malik et al, 2013). reason, it is urgent and important to identify a biochemical indicator related to soil microbial dynamics in order to quantify soil quality (Pascazio et al, 2018;Gil-Sotres et al, 2005). Soil moisture, together with soil temperature, pH and oxygen strongly affects population growth, mobility, nutrient consumption of soil microorganisms, having a direct effect on the N mineralization rate (Sofo et al, 2014).…”
Section: Introductionmentioning
confidence: 99%
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“…and the ecosystem services it provides are under threat from a range of natural and manmade drivers, including human management of agricultural and other soils [3]. In many parts of the world, fruit groves are endangered by an increasing water shortage often due to changes in rainfall frequency and distribution, and rise of soil aridity and desertification, with resulting critical and low levels of soil organic matter (SOM) and contents of macro-and micronutrients [4]. This insufficient return of SOM to orchard soils has led to severe degradation of the productive capacity of naturally poor soils [5].…”
Section: Introductionmentioning
confidence: 99%