Microarray Analysis of bacterial blight resistance 1 mutant rice infected with Xanthomonas oryzae pv. oryzae

Yi, So Young; Lee, Ha Yeon; Kim, Hyun A; Lim, Chan Ju; Kim, Woong Bom; Jang, Hyun A; Jeon, Jong‐Seong; Kwon, Suk‐Yoon

doi:10.9787/pbb.2013.1.4.354

Cited by 9 publications

(4 citation statements)

References 48 publications

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“…The highest number of TF-binding sites were found in the promoter region of Os06g0565100 (1309) ( Table S1 ) and also the highest number of TFs specific only for this MAX1 homolog was identified ( Table S7 ). Similar to the previous genes that were analysed, Os06g0565100 may be also under control of TFs involved in plant response to bacteria [ 120 , 121 ], fungi [ 67 , 68 , 122 , 123 , 124 ] and insects [ 125 , 126 ], as well as cold [ 52 , 53 , 84 , 127 , 128 ], drought [ 54 , 55 , 56 , 57 , 86 , 87 , 114 ], cadmium [ 62 , 129 ], submergence [ 91 , 130 , 131 ], salt [ 85 , 132 ], arsenic [ 61 , 83 ], or iron [ 133 ], nitrogen [ 63 , 64 , 94 , 134 ] and phosphorus [ 88 ] deficiency. In the promoter region of Os06g0565100 motifs recognised by TFs are related to flower [ 116 , 135 ] and root [ 81 , 115 , 136 ] development, or controlling shoot architecture [ 137 ].…”

Section: Resultsmentioning

confidence: 57%

Diverse Roles of MAX1 Homologues in Rice

Marzec

Situmorang

Brewer

et al. 2020

Genes

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Cytochrome P450 enzymes encoded by MORE AXILLARY GROWTH1 (MAX1)-like genes produce most of the structural diversity of strigolactones during the final steps of strigolactone biosynthesis. The diverse copies of MAX1 in Oryza sativa provide a resource to investigate why plants produce such a wide range of strigolactones. Here we performed in silico analyses of transcription factors and microRNAs that may regulate each rice MAX1, and compared the results with available data about MAX1 expression profiles and genes co-expressed with MAX1 genes. Data suggest that distinct mechanisms regulate the expression of each MAX1. Moreover, there may be novel functions for MAX1 homologues, such as the regulation of flower development or responses to heavy metals. In addition, individual MAX1s could be involved in specific functions, such as the regulation of seed development or wax synthesis in rice. Our analysis reveals potential new avenues of strigolactone research that may otherwise not be obvious.

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Section: Resultsmentioning

confidence: 57%

Diverse Roles of MAX1 Homologues in Rice

Marzec

Situmorang

Brewer

et al. 2020

Genes

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“…59 reported GBSSI as a protein related to defence and in the work of Yi et al . 60 GBSSI resulted among the downregulated gene in rice plants infected with Xanthomonas oryzae pv. oryzae .…”

Section: Resultsmentioning

confidence: 99%

Xylem cavitation susceptibility and refilling mechanisms in olive trees infected by Xylella fastidiosa

Sabella

Aprile

Genga

et al. 2019

Sci Rep

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In olive trees, Xylella fastidiosa colonizes xylem vessels and compromises water transport causing the olive quick decline syndrome (OQDS). The loss of hydraulic conductivity could be attributed to vessel occlusions induced both by the bacteria biofilm and by plant responses (tyloses, gums, etc.) that could trigger embolism. The ability of the infected plants to detect embolism and to respond, by activating mechanisms to restore the hydraulic conductivity, can influence the severity of the disease symptomatology. In order to investigate these mechanisms in the X . fastidiosa -resistant olive cultivar Leccino and in the susceptible Cellina di Nardò, sections of healthy olive stems were analysed by laser scanning microscope to calculate the cavitation vulnerability index. Findings indicated that the cultivar Leccino seems to be constitutively less susceptible to cavitation than the susceptible one. Among the vascular refilling mechanisms, starch hydrolysis is a well-known strategy to refill xylem vessels that suffered cavitation and it is characterized by a dense accumulation of starch grains in the xylem parenchima; SEM-EDX analysis of stem cross-sections of infected plants revealed an aggregation of starch grains in the Leccino xylem vessels. These observations could indicate that this cultivar, as well as being anatomically less susceptible to cavitation, it also could be able to activate more efficient refilling mechanisms, restoring vessel’s hydraulic conductivity. In order to verify this hypothesis, we analysed the expression levels of some genes belonging to families involved in embolism sensing and refilling mechanisms: aquaporins, sucrose transporters, carbohydrate metabolism and enzymes related to starch breakdown, alpha and beta-amylase. The obtained genes expression patterns suggested that the infected plants of the cultivar Leccino strongly modulates the genes involved in embolism sensing and refilling.

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“…Among them, several studies emphasized their regulation in response to stress like drought ( Os02g0705500, (Minh-Thu et al 2018)), excessive Fe in roots ( Os01g0129600 , (Bashir et al 2014)), macronutrient deficiency ( Os12g0582900 , (Takehisa et al 2015)), high temperature ( Os08g0442400 , (Endo et al 2009)) and infections by Xanthomonas oryzae pv. oryzae ( Os12g0586300, (Wang et al 2019); Os03g0820400 , (Yi et al 2014)).…”

Section: Discussionmentioning

confidence: 99%

Unraveling the Genetic Elements Involved in Shoot and Root Growth Regulation by Jasmonate in Rice Using a Genome-Wide Association Study

Nguyen

Dang

et al. 2019

Rice

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Background Due to their sessile life style, plant survival is dependent on the ability to build up fast and highly adapted responses to environmental stresses by modulating defense response and organ growth. The phytohormone jasmonate plays an essential role in regulating these plant responses to stress. Results To assess variation of plant growth responses and identify genetic determinants associated to JA treatment, we conducted a genome-wide association study (GWAS) using an original panel of Vietnamese rice accessions. The phenotyping results showed a high natural genetic variability of the 155 tested rice accessions in response to JA for shoot and root growth. The level of growth inhibition by JA is different according to the rice varieties tested. We conducted genome-wide association study and identified 28 significant associations for root length (RTL), shoot length (SHL), root weight (RTW), shoot weight (SHW) and total weight (TTW) in response to JA treatment. Three common QTLs were found for RTL, RTW and SHL. Among a list of 560 candidate genes found to co-locate with the QTLs, a transcriptome analysis from public database for the JA response allows us to identify 232 regulated genes including several JA-responsive transcription factors known to play a role in stress response. Conclusion Our genome-wide association study shows that common and specific genetic elements are associated with inhibition of shoot and root growth under JA treatment suggesting the involvement of a complex JA-dependent genetic control of rice growth inhibition at the whole plant level. Besides, numerous candidate genes associated to stress and JA response are co-located with the association loci, providing useful information for future studies on genetics and breeding to optimize the growth-defense trade-off in rice. Electronic supplementary material The online version of this article (10.1186/s12284-019-0327-5) contains supplementary material, which is available to authorized users.

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Microarray Analysis of bacterial blight resistance 1 mutant rice infected with Xanthomonas oryzae pv. oryzae

Cited by 9 publications

References 48 publications

Diverse Roles of MAX1 Homologues in Rice

Diverse Roles of MAX1 Homologues in Rice

Xylem cavitation susceptibility and refilling mechanisms in olive trees infected by Xylella fastidiosa

Unraveling the Genetic Elements Involved in Shoot and Root Growth Regulation by Jasmonate in Rice Using a Genome-Wide Association Study

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