Purpose: Despite multimodal aggressive treatment glioblastoma patients still face a rather poor prognosis. Recent data indicate that certain molecular markers, in particular MGMT promoter hypermethylation, are associated with response to alkylating chemotherapy and longer survival. The clinical significance of other glioblastoma-associated molecular aberrations and their relationship to MGMT promoter hypermethylation is still poorly understood. Experimental Design: We conducted a translational study involving 67 newly diagnosed glioblastoma patients treated at our institution from 1998 to 2004. All patients were treated by open resection, followed by radiotherapy and adjuvant temozolomide chemotherapy. The tumors were investigated for MGMT promoter methylation, mRNA and protein expression, as well as presence of MGMT sequence polymorphisms. In addition, we screened for genetic aberrations of the EGFR, TP53, CDK4, MDM2, and PDGFRA genes as well as allelic losses on chromosomal arms 1p, 10q, and 19q. Results: Correlation of molecular findings with clinical data revealed significantly longer time to progression after onset of chemotherapy and longer overall survival of patients with MGMT-hypermethylated tumors. In contrast, MGMT protein expression, MGMT polymorphisms, and aberrations in any of the other genes and chromosomes were not significantly linked to patient outcome. Multivariate analysis identified MGMT promoter hypermethylation and near-complete tumor resection as the most important parameters associated with better prognosis. Conclusion: Our study provides novel insights into the significance of molecular and clinical markers in predicting the prognosis of glioblastoma patients, which may improve stratification of patients into distinct prognostic subgroups. (Clin Cancer Res 2009;15(21):6683-93) Glioblastoma is the most common primary brain tumor in adults and belongs to the most malignant types of human cancers, as indicated by a median survival time of <1 year in a population-based study (1). The standard treatment for glioblastoma comprises surgical resection followed by local radiotherapy as well as systemic chemotherapy with the DNA alkylating agent temozolomide. According to the results of the European Organization for Research and Treatment of Cancer (EORTC) and the National Cancer Institute of Canada (NCIC) prospective clinical trial 26981-22981/CE.3, the combination of surgery followed by radiotherapy with concomittant and adjuvant temozolomide increased the median survival of glioblastoma patients by 2.5 months in comparison with treatment with surgery followed by radiotherapy alone (2). Furthermore, the 2-year survival rate increased from 10.4% in the radiotherapy group to 26.5% in the radiotherapy plus temozolomide group (2). Based on molecular analysis of 206 patients from this trial, O6-methylguanine-DNA methyltransferase (MGMT) promoter hypermethylation was shown to play an important role as a molecular predictor for response to temozolomide and longer survival (3). The MGMT ge...