Quantification of the gas streams from chemical systems such as catalytic reactors are routinely performed by on-line chromatography. Gas chromatographs used for this purpose are typically provided with a combination of thermal conductivity (TCD) and flame ionization (FID) detectors to be able to detect and quantify both permanent gases and hydrocarbons. However, the accuracy of the quantification is hindered by the intrinsic limitations of each type of detector. Namely, TCD has low sensitivity and FID does not detect permanent gases; COx, N2, H2, etc. Therefore, modern gas chromatographs include methanizer units to partially overcome this shortcoming by converting COx to methane. However, as far as these authors know, the literature has not presented an analytical method to characterize gas streams with high accuracy by the simultaneous use of a combination of a TCD-FID detection system provided with a methanizer. In this work, we developed analytical methods for this purpose. Our approach consisted on formulating a mathematical model for the well-known external and internal standard quantification methods in gas chromatography. We specifically applied the methodology to the analysis of the gas streams from a catalytic reactor performing the combustion of methane. We found that the commonly applied external standard method leads not only to inaccurate quantification but also to physically meaningless conclusions on the behavior of the selected model system. In contrast, the internal standard method led to a highly accurate quantification with a physical meaning. Considering these findings, our contribution also draws attention to the need for a thoughtful application of chromatographic methods when studying the reactivity of gas systems.