Metformin is considered as the go-to
drug in the treatment of diabetes.
However, it is either prescribed in lower doses or not prescribed
at all to patients with kidney problems. To find a potential explanation
for this practice, we employed atomistic-level computer simulations
to simulate the transport of metformin through multidrug and toxin
extrusion 1 (MATE1), a protein known to play a key role in the expulsion
of metformin into urine. Herein, we examine the hydrogen bonding between
MATE1 and one or more metformin molecules. The simulation results
indicate that metformin continuously forms and breaks off hydrogen
bonds with MATE1 residues. However, the mean hydrogen bond lifetimes
increase for an order of magnitude when three metformin molecules
are inserted instead of one. This new insight into the metformin transport
process may provide the molecular foundation behind the clinical practice
of not prescribing metformin to kidney disease patients.