Coiled-coil peptides are high-affinity, selective, self-assembling
binding motifs, making them attractive components for the preparation
of functional biomaterials. Photocontrol of coiled-coil self-assembly
allows for the precise localization of their activity. To rationally
explore photoactivity in a model coiled coil, three azobenzene-containing
amino acids were prepared and substituted into the hydrophobic core
of the E3/K3 coiled-coil heterodimer. Two of
the non-natural amino acids, APhe1 and APhe2, are based on phenylalanine and differ in the presence of a carboxylic
acid group. These have previously been demonstrated to modulate protein
activity. When incorporated into peptide K3, coiled-coil
binding strength was affected upon isomerization, with the two variants
differing in their most folded state. The third azobenzene-containing
amino acid, APgly, is based on phenylglycine and was
prepared to investigate the effect of amino acid size on photoisomerization.
When APgly is incorporated into the coiled coil, a 4.7-fold
decrease in folding constant is observed upon trans-to-cis isomerizationthe
largest difference for all three amino acids. Omitting the methylene
group between azobenzene and α-carbon was theorized to both
position the diazene of APgly closer to the hydrophobic
amino acids and reduce the possible rotations of the amino acid, with
molecular dynamics simulations supporting these hypotheses. These
results demonstrate the ability of photoswitchable amino acids to
control coiled-coil assembly through disruption of the hydrophobic
interface, a strategy that should be widely applicable.