Abstract:This review summarizes the field of bioorganometallic nucleic acid chemistry, with a specific focus on various synthetic approaches for utilizing organometallic groups, in particular ferrocene, as functional tags for existing nucleic acids or as components for novel nucleic acid analogues.
“…The ferrocenyl moiety adopts an eclipsed conformation with the average C1−Mp1−Mp2−C6 (Mp=midpoint of the cyclopentadienyl ligand) angles of −1.13° and 0.81° for ( S , R )‐ 2 and ( R , S )‐ 2 , respectively. The geometry of the methylated thymine does not show significant differences compared with the literature . In both structures the methylated thymine moiety points away from the ferrocenyl group.…”
Section: Resultssupporting
confidence: 90%
“…The first relies on chemical or enzymatic oligomerization/incorporation of ferrocenyl nucleosides into the biopolymer and the second uses postsynthetic incorporation of ferrocenyl moieties into oligonucleotide strands. These strategies have been discussed in an excellent review . The development of ferrocenyl XNA nucleosides and nucleic acids is a hot topic in chemistry.…”
The enantioselective synthesis and electrochemistry of the first ferrocenyl GNA nucleosides is reported. These compounds were obtained by a Sharpless asymmetric dihydroxylation reaction of [3‐(N1‐thyminyl)‐1‐(ferrocenyl)]propene as S,R and R,S enantiomers in about 70 % yield with enantiomeric excesses of >99 % and 71 %, respectively. The absolute configurations of the chiral carbon atoms in the nucleosides were assigned by single‐crystal X‐ray diffraction analysis of the methyl derivatives in the solid state. The compounds were also studied with circular dichroism (CD) spectroscopy in solution. The enantiomeric relationship between the S,R and R,S isomers was confirmed by the near‐mirror‐image CD spectra. The redox properties of the nucleosides and their methylated derivatives were investigated using cyclic voltammetry. The cyclic voltammograms revealed reversible redox processes for the entire series of compounds at potentials of −25 mV (for nonmethylated derivatives) and 75 mV (for methylated derivatives) versus the ferrocene/ferrocenium reference redox couple.
“…The ferrocenyl moiety adopts an eclipsed conformation with the average C1−Mp1−Mp2−C6 (Mp=midpoint of the cyclopentadienyl ligand) angles of −1.13° and 0.81° for ( S , R )‐ 2 and ( R , S )‐ 2 , respectively. The geometry of the methylated thymine does not show significant differences compared with the literature . In both structures the methylated thymine moiety points away from the ferrocenyl group.…”
Section: Resultssupporting
confidence: 90%
“…The first relies on chemical or enzymatic oligomerization/incorporation of ferrocenyl nucleosides into the biopolymer and the second uses postsynthetic incorporation of ferrocenyl moieties into oligonucleotide strands. These strategies have been discussed in an excellent review . The development of ferrocenyl XNA nucleosides and nucleic acids is a hot topic in chemistry.…”
The enantioselective synthesis and electrochemistry of the first ferrocenyl GNA nucleosides is reported. These compounds were obtained by a Sharpless asymmetric dihydroxylation reaction of [3‐(N1‐thyminyl)‐1‐(ferrocenyl)]propene as S,R and R,S enantiomers in about 70 % yield with enantiomeric excesses of >99 % and 71 %, respectively. The absolute configurations of the chiral carbon atoms in the nucleosides were assigned by single‐crystal X‐ray diffraction analysis of the methyl derivatives in the solid state. The compounds were also studied with circular dichroism (CD) spectroscopy in solution. The enantiomeric relationship between the S,R and R,S isomers was confirmed by the near‐mirror‐image CD spectra. The redox properties of the nucleosides and their methylated derivatives were investigated using cyclic voltammetry. The cyclic voltammograms revealed reversible redox processes for the entire series of compounds at potentials of −25 mV (for nonmethylated derivatives) and 75 mV (for methylated derivatives) versus the ferrocene/ferrocenium reference redox couple.
“…Over recent decades, a sustained effort has been devoted to the development of artificial metal-mediated base pairs, which are formed through metal coordination bonding instead of hydrogen bonding [ 4 , 5 ]. Metal coordination is one of the most employed interactions for designing the self-assembly of molecules [ 6 ] and thus has been also utilized for the construction of DNA-based materials [ 7 , 8 , 9 ]. Metallo-base pairs, consisting of two ligand-bearing nucleosides and a bridging metal ion, have unique and fascinating characteristics as noted below.…”
A metal-mediated base pair, composed of two ligand-bearing nucleotides and a bridging metal ion, is one of the most promising components for developing DNA-based functional molecules. We have recently reported an enzymatic method to synthesize hydroxypyridone (H)-type ligand-bearing artificial DNA strands. Terminal deoxynucleotidyl transferase (TdT), a template-independent DNA polymerase, was found to oligomerize H nucleotides to afford ligand-bearing DNAs, which were subsequently hybridized through copper-mediated base pairing (H–CuII–H). In this study, we investigated the effects of a metal cofactor, MgII ion, on the TdT-catalyzed polymerization of H nucleotides. At a high MgII concentration (10 mM), the reaction was halted after several H nucleotides were appended. In contrast, at lower MgII concentrations, H nucleotides were further appended to the H-tailed product to afford longer ligand-bearing DNA strands. An electrophoresis mobility shift assay revealed that the binding affinity of TdT to the H-tailed DNAs depends on the MgII concentration. In the presence of excess MgII ions, TdT did not bind to the H-tailed strands; thus, further elongation was impeded. This is possibly because the interaction with MgII ions caused folding of the H-tailed strands into unfavorable secondary structures. This finding provides an insight into the enzymatic synthesis of longer ligand-bearing DNA strands.
“…anticancer or antibacterial) properties. Thus, metal-containing moieties have been conjugated to a number of biological vectors including peptides, 16 steroid hormones, 17 nucleobases and nucleotides, 18,19 and secondary natural products. 20 Synthetic drugs have also attracted great attention as targets for metal conjugation.…”
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