Metagenomics Approaches to Study Microbes in the E-waste Polluted Environment

Shah, Naseer Ali; Kaleem, Imdad; Rasheed, Yasir

doi:10.1007/978-3-030-26615-8_11

Cited by 1 publication

(1 citation statement)

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“…Galaxy-P (Galaxy for Proteomics) facilitates the integrative analysis of proteomic data alongside genomic or transcriptomic data. Its application in metaproteomics offers a comprehensive solution, encompassing database generation from sequencing data, iterative database searches, and subsequent taxonomic and functional analyses using external tools, such as Unipept and MEGAN (Shah et al, 2023). These web-based tools serve as invaluable resources for researchers to decipher complex biological datasets and to advance our understanding of omics-driven research across various disciplines.…”

Section: Modern Web-based Omics Tools For Plant-microbe Interactionmentioning

confidence: 99%

Omics approaches in understanding the benefits of plant-microbe interactions

Jain,

Sarsaiya,

Singh

et al. 2024

Front. Microbiol.

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Plant-microbe interactions are pivotal for ecosystem dynamics and sustainable agriculture, and are influenced by various factors, such as host characteristics, environmental conditions, and human activities. Omics technologies, including genomics, transcriptomics, proteomics, and metabolomics, have revolutionized our understanding of these interactions. Genomics elucidates key genes, transcriptomics reveals gene expression dynamics, proteomics identifies essential proteins, and metabolomics profiles small molecules, thereby offering a holistic perspective. This review synthesizes diverse microbial-plant interactions, showcasing the application of omics in understanding mechanisms, such as nitrogen fixation, systemic resistance induction, mycorrhizal association, and pathogen-host interactions. Despite the challenges of data integration and ethical considerations, omics approaches promise advancements in precision intervention and resilient agricultural practices. Future research should address data integration challenges, enhance omics technology resolution, explore epigenomics, and understand plant-microbe dynamics under diverse conditions. In conclusion, omics technologies hold immense promise for optimizing agricultural strategies and fortifying resilient plant-microbe alliances, paving the way for sustainable agriculture and environmental stewardship.

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Section: Modern Web-based Omics Tools For Plant-microbe Interactionmentioning

confidence: 99%