The solute carrier 2 family is composed
of 14 transporters, which
are members of the major facilitator superfamily. Despite their high
physiological importance, there are still many open questions concerning
their function and specificity, and in some cases, their physiological
substrate is still unknown. To understand the determinants of the
substrate and inhibitor specificity, we modeled all human glucose
transport carriers (GLUTs) and simulated their interaction with known
ligands. Comparative modeling was performed with the @TOME-2 pipeline,
employing multiple templates and providing an ensemble of models for
each GLUT. We analyzed models in both outward-occluded and inward-open
conformations, to compare exofacial and endofacial binding sites throughout
the family and understand differences in susceptibility of GLUTs to
the inhibitor cytochalasin B. Finally, we employed molecular docking
and bioinformatics to identify residues likely critical for recognition
of myo-inositol by GLUT13 and urate by GLUT9. These results provide
insights into the molecular basis for the specificity for these substrates.
In addition, we suggested a potential recognition site of glucosamine
by GLUT11 to be evaluated in future experiments.