Messages through Bottlenecks: On the Combined Use of Slow and Fast Evolving Polymorphic Markers on the Human Y Chromosome

Knijff, Peter de

doi:10.1086/321215

Cited by 41 publications

(48 citation statements)

References 39 publications

(46 reference statements)

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“…The next phase should be to develop suites of information-rich Y chromosome DNA markers for each species. Surveys of variation in the nonrecombining portion of this chromosome have been immensely valuable in complementing and adding to the picture of recent human evolution that emerged from mtDNA surveys (21). Fortunately in many cases, animal geneticists should be able to short-circuit Y chromosome marker development.…”

Section: Domestic Goat Phylogeographymentioning

confidence: 99%

Livestock genetic origins: Goats buck the trend

MacHugh

Bradley

2001

Proc. Natl. Acad. Sci. U.S.A.

198

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Section: Domestic Goat Phylogeographymentioning

confidence: 99%

Livestock genetic origins: Goats buck the trend

MacHugh

Bradley

2001

Proc. Natl. Acad. Sci. U.S.A.

198

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“…Consequently, common haplotypes, because they come from large pedigrees within a certain population, may be only sampled once and therefore frequencies will be underestimated because of deliberate non-relatedness selection criteria [31,32]. In a random survey from a large cosmopolitan population with marked mobility, the chance of selecting two patrilineage-related people is low.…”

Section: Population Genetics and The Collection Of Databasesmentioning

confidence: 99%

DNA Commission of the International Society of Forensic Genetics: recommendations on forensic analysis using Y-chromosome STRs

Gill

Brenner²,

Brinkmann

et al. 2001

International Journal of Legal Medicine

136

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During the past few years the DNA commission of the International Society of Forensic Genetics has published a series of documents providing guidelines and recommendations concerning the application of DNA polymorphisms to the problems of human identification. This latest report addresses a relatively new area, namely Y-chromosome polymorphisms, with particular emphasis on short tandem repeats (STRs). This report addresses nomenclature, use of allelic ladders, population genetics and reporting methods.

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“…Limitations to the use of Y-STR loci for haplogroup inference depend on the high mutation rate, which might homogenize haplotypes of different descent [29]. Combined analysis of Y-SNPs and Y-STRs in Italians carrying haplogroup E1b1b1a showed that, if considering minHt loci with the exclusion of biallelic DYS385, two cases of haplotype sharing between E-V12* and E-V13* individuals and one between E-V12* and E-V65 subjects were observed (Table S5 of Electronic supplementary material).…”

Section: Resultsmentioning

confidence: 99%

Subtyping of Y-chromosomal haplogroup E-M78 (E1b1b1a) by SNP assay and its forensic application

et al. 2009

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The continual discovery of new single-nucleotide polymorphisms (SNPs) has led to an increased resolution of the Y chromosome phylogeny. Some of these Y-SNPs have shown to be restricted to small geographical regions and therefore may prove useful in the forensic field as tools for the prediction of population of origin of unknown casework samples. Here, we describe a system for the molecular dissection of haplogroup E-M78 (E1b1b1a), consisting of multiplex polymerase chain reaction and minisequencing of M78 and nine population-informative Y-SNPs (M148, M224, V12, V13, V19, V22, V27, V32, V65) in a single reaction. Sensitivity and admixture studies demonstrated that the SNP protocol allows robust genotyping from as little as 50 pg of male DNA, even in the presence of 500-fold amounts of female DNA. In order to evaluate the suitability of E1b1b1a, subhaplogrouping for population-of-origin prediction, the distribution of E-M78 and its derived variants was determined in an Italian population sample (n = 326).

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Messages through Bottlenecks: On the Combined Use of Slow and Fast Evolving Polymorphic Markers on the Human Y Chromosome

Cited by 41 publications

References 39 publications

Livestock genetic origins: Goats buck the trend

Livestock genetic origins: Goats buck the trend

DNA Commission of the International Society of Forensic Genetics: recommendations on forensic analysis using Y-chromosome STRs

Subtyping of Y-chromosomal haplogroup E-M78 (E1b1b1a) by SNP assay and its forensic application

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