On the mean, ocean carbon uptake is linked to biological productivity, but how biological variability impacts carbon uptake is poorly quantified. Our ability to diagnose past change, understand present variability, and predict the future state of the global carbon cycle requires improving mechanistic understanding in this area. Here we make use of colocated pCO2 and temperature data, a merged surface ocean color product, and physical fields from an ocean state estimate to assess relationships between surface ocean biology and the carbon cycle on seasonal, monthly anomaly, and interannual timescales over the period 1998–2014. Using a correlation analysis on spatial scales from local to basin‐scale biomes, we identify the timescales on which ocean productivity could be directly modifying ocean carbon uptake. On seasonal timescales outside of the equatorial Pacific, biome‐scale correlations are negative between chlorophyll and pCO2. Though this relationship is pervasive, the underlying mechanisms vary across timescales and biomes. Consistent with previous findings, biological activity is a significant driver of pCO2 seasonality only in the subpolar biomes. For monthly anomalies acting on top of the mean seasonality, productivity and pCO2 changes are significantly correlated in the subpolar North Pacific and Southern Ocean. Only in the Southern Ocean are correlations consistent with a dominant role for biology in the surface ocean carbon cycle on all timescales.