In this work, we analyzed cytogenetically eight Chactidae and Buthidae, including the localization of repetitive DNA sequences. The chactids possess monocentric chromosomes and the highest diploid numbers (2n=50 in
Brotheas amazonicus
, 2n=36 in
Chactopsis amazonica
, 2n=30 in
Neochactas
sp.) when compared with buthids (2n=10 in
Tityus bahiensis
, 2n=14 in
Tityus apiacas
and
Tityus metuendus
, 2n=18 in
Tityus aba
, 2n=26 in
Ischnotelson peruassu
). The localization of rDNA genes and (TTAGG)n sequences exhibited a conserved pattern of two terminal/subterminal ribosomal cistrons and terminal telomere signals. However, the comparison between the data of C-banding, DAPI after FISH and Cot-DNA fraction indicated a variable quantity and distribution of these regions, as follow: (i) positive heterochromatin and Cot-DNA signals (
B. amazonicus
and
I. peruassu
), (ii) small blocks of heterochromatin with large Cot-DNA signals (
T. metuendus
), (iii) positive heterochromatic regions and absence of Cot-DNA signals (
T. aba
and
T. apiacas
), and (iv) negative heterochromatin and Cot-DNA signals (
T. bahiensis
). Therefore, our results revealed that there still is not a clear relation between quantity of heterochromatin and presence of monocentric or holocentric chromosomes and occurrence of chromosomal rearrangements, indicating that repetitive regions in scorpions must be analyzed using different cytogenetic approaches.