Inositol 1,4,5-trisphosphate (IP 3 ) receptors form tetrameric channels in endoplasmic reticulum membranes of mammalian cells and mediate IP 3 -induced calcium mobilization. In response to various extracellular stimuli that persistently elevate IP 3 levels, IP 3 receptors are also ubiquitinated and then degraded by the proteasome. Here, for endogenous type 1 IP 3 receptor (IP 3 R1) activated by endogenous signaling pathways and processed by endogenous enzymes, we sought to determine the sites of ubiquitination and the composition of attached ubiquitin conjugates. Our findings are (i) that at least 11 of the 167 lysines in IP 3 R1 can be ubiquitinated and that these are clustered in the regulatory domain and are found in surface regions, (ii) that at least ϳ40% of the IP 3 R1-associated ubiquitin is monoubiquitin, (iii) that both Lys 48 and Lys 63 linkages are abundant in attached ubiquitin chains, and (iv) that Lys 63 linkages accumulate most rapidly. Additionally, we find that not all IP 3 R1 subunits in a tetramer are ubiquitinated and that nontetrameric IP 3 R1 complexes form as degradation proceeds, suggesting that ubiquitinated subunits may be selectively extracted and degraded. Overall, these data show that endogenous IP 3 R1 is tagged with an array of ubiquitin conjugates at multiple sites and that both IP 3 R1 ubiquitination and degradation are highly complex processes.Inositol 1,4,5-trisphosphate (IP 3 ) 4 receptors (IP 3 Rs) are ϳ300-kDa endoplasmic reticulum (ER) membrane proteins that tetramerize to form Ca 2ϩ channels that are gated by the co-agonists IP 3 and Ca 2ϩ and that govern Ca 2ϩ release from the ER (1-3). There are three homologous mammalian IP 3 R types (termed IP 3 R1, IP 3 R2, and IP 3 R3) that can form either homo-or heterotetrameric channels. Each can be divided into an N-terminal ligand-binding domain, a large central regulatory domain that contains several modulatory sites, and a C-terminal channel domain that contains six membrane-spanning helices and the channel pore (see Fig.