Mechanism of irreversible inhibition of Mycobacterium tuberculosis shikimate kinase by ilimaquinone

Abstract

Ilimaquinone (IQ), a marine sponge metabolite, has been considered as a potential therapeutic agent for various diseases due to its broad range of biological activities. We show that IQ irreversibly inactivates Mycobacterium tuberculosis shikimate kinase (MtSK) through covalent modification of the protein. Inactivation occurred with an apparent second-order rate constant of about 60 M s. Following reaction with IQ, LC-MS analyses of intact MtSK revealed covalent modification of MtSK by IQ, with the concomitant loss of a methoxy group, suggesting a Michael-addition mechanism. Evaluation of tryptic fragments of IQ-derivatized MtSK by MS/MS demonstrated that Ser and Thr residues were most frequently modified with lesser involvement of Lys and Tyr. In or near the MtSK active site, three residues of the P-loop (K15, S16, and T17) as well as S77, T111, and S44 showed evidence of IQ-dependent derivatization. Accordingly, inclusion of ATP in IQ reactions with MtSK partially protected the enzyme from inactivation and limited IQ-based derivatization of K15 and S16. Additionally, molecular docking models for MtSK-IQ were generated for IQ-derivatized S77 and T111. In the latter, ATP was observed to sterically clash with the IQ moiety. Out of three other enzymes evaluated, lactate dehydrogenase was derivatized and inactivated by IQ, but pyruvate kinase and catalase-peroxidase (KatG) were unaffected. Together, these data suggest that IQ is promiscuous (though not entirely indiscriminant) in its reactivity. As such, the potential of IQ as a lead in the development of antitubercular agents directed against MtSK or other targets is questionable.

Ilimaquinone Induces the Apoptotic Cell Death of Cancer Cells by Reducing Pyruvate Dehydrogenase Kinase 1 Activity

“…Because this moiety is critical for their binding to the ATP binding site of heat shock protein 90 (Hsp90), radicicol and M77976 also inhibit the kinase activity of Hsp90 [34,39]. Although IQ does not have the resorcinol moiety, it has been reported to be an inhibitor of other enzymes, including Mycobacterium tuberculosis shikimate kinase, S-adenosylhomocysteine hydrolase, DNA polymerase β, and M-phase inducer phosphatase 2 [25,40,41]. It is well known that some natural products exert activities on multiple targets.…”

Ilimaquinone Induces Apoptosis and Autophagy in Human Oral Squamous Cell Carcinoma Cells

“…Among marine organisms, marine sponges produce several secondary metabolites, including quinones, steroids, alkaloids, terpenoids, and fatty acids, some of which possess drug-like characteristics [10]. Ilimaquinone (IQ), a sesquiterpene quinone isolated from marine sponges, exhibits a variety of biological activities, including anti-inflammatory [11], antitubercular [12], anti-HIV [13], and anti-tumor [14]. Previous studies have revealed that IQ interferes with protein transport by damaging the Golgi apparatus in cervical cancer cells [15].…”

Quintaquinone, a Merosesquiterpene from the Yellow Sponge Verongula cf. rigida Esper

“…Several merosesquiterpenes are biologically active. For example, ilimaquinone ( 1 ) is cytotoxic against various cancer cell lines, with IC 50 values in a range of 0.5–25 μM, and has shown other related activities including anti-HIV and antituberculosis activities. , …”