From two AFM images, scanned in two orthogonal directions, a method is proposed to reconstruct a reference image that is deprived of the slow-scan drifts of each image, and hence that benefits from the fast-scan accuracy of both images. This method, extending that initially proposed by Sun and Pang [1], is formulated as a global Digital Image Correlation (DIC) problem. The analysis provides not only a reference image but also a residual map, allowing checking of the validity of the correction, and the slow-drift corrections. The algorithm is applied to AFM images of spherulites obtained in tapping mode. It is shown that artificial strains as large as 16 per cent can be corrected from this procedure.