IntroductionR ecalcitrance is a multi-scale phenomenon involving the intricate network of cellulose nanofibrils and cross-linkages of lignin and hemicellulose. Breaking the chemical barriers implicated in recalcitrance is important for utilization of lignocellulosic biomass in the world's sustainable energy portfolio. 1-3 Improving the accessibility of cellulose for enzymatic hydrolysis requires new technologies to explore the ultrastructure of biomass at nanoscale. 4 Mode-synthesizing atomic force microscopy (MSAFM), presented in Figure 1, offers a new avenue to investigate the internal physical properties of plant cell walls. 5 In recent years, multi-frequency atomic force microscopy (AFM) has occupied center stage in innovative nanometrology. [6][7][8] While an AFM is capable of measuring a multitude of topographic features, new forms of multi-frequency AFM have the potential to overcome the limitations of conventional force microscopes in subsurface imaging, spatial resolution, and real-time imaging. 5,9 While multi-frequency AFM techniques are still in their infancy, their potential to study various dynamical aspects of vibrating nano-structures or to perform subsurface imaging of nanoparticles in fixed cells has been demonstrated. 9-11 However, their use in biofuels research remains underexplored. 12,13 In general, life sciences applications remain a challenge for AFM due to the structural complexity, heterogeneous organization in innate systems, and presence of water. In biofuels research, a range of characterization techniques, from biochemical analysis to spectroscopy (e.g., Raman spectroscopy, laser-scanning confocal fluorescence microscopy, and nuclear magnetic resonance spectroscopy), have been employed to investigate the behavior of recalcitrance at the nano-, micro-and macro-scale. [14][15][16] Morphological studies of cell walls using electron microscopy (e.g., scanning electron microscopy, transmission electron microscopy, electron spectroscopy for chemical analysis, or immunoelectron microscopy) and force microscopy (e.g., nanoindenter or AFM) have been attempted. 12,14,17,18 Yet, because the plant cell wall thickness is in the micrometer range and underlying features, such as cellulose nanofibrils, are in the nanometer range, there is an urgent need to characterize morphology and physical and chemical properties simultaneously and at nanoscale. 19 MSAFM constitutes a first step toward this goal.We propose to utilize the high spatial resolution capabilities and rich dynamic attributes of MSAFM to resolve new features of the plant cell wall using sectioned fresh Populus samples-each typically 50 micrometers thick and less than a centimeter in diameter-as model substrates. The motivation behind using this plant system is to advance the understanding of cell wall structure to improve the effectiveness of further chemical treatments, such as the holopulping processes and acid treatments involved in the conversion of polysaccharides into simple sugars for fermentation into ethanol for biofuel.In AFM, ...