This work aimed to evaluate for the first time in Egypt the biodiversity of mycobiota that inhabit the guts of three insect species collected from Assiut Governorate. 50 adult insect samples (28 worker honey bees, 11 black beetles and 11 red palm weevils) were analyzed. 68 species and three varieties were recovered of which 49 species and 2 varieties were filamentous fungi and 19 species + one variety were yeasts. The number of taxa recovered from red-palm weevils and honey bees was almost equal, while lower number was isolated from beetles. However, a higher number of yeast species was obtained from the gut of red-palm weevils than those obtained from honey bees or black beetles. Some filamentous species were recovered from the guts of the three insect species (Aspergillus niger, A. parasiticus, A. terreus, Cladosporium cladosporioides, Penicillium chrysogenum), while others were reported from one or two insect species. However, none of yeast species was regularly recovered from the three insect guts, but two insect species may share the same yeast species in their guts. Other yeast species were restrictedly isolated from guts of one insect species. Some gut samples were fungi-free. To our knowledge, some of the isolated yeast species are being reported here for the first time from insect guts. On the other hand, ITS sequence data from several strains did not match well with those of known described species, and are probably new species.