Massilia arenae sp. nov., isolated from sand soil in the Qinghai–Tibetan Plateau

Zhang, Binglin; Yang, Ruiqi; Zhang, Gaosen; Zhang, Dongming; Zhang, Wei; Chen, Tuo; Lu, Guangxiu

doi:10.1099/ijsem.0.004056

Cited by 11 publications

(12 citation statements)

References 41 publications

(53 reference statements)

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“…The draft genome size of strain R798 T was 4 990 115 bp and 4597 total genes, 4527 protein coding genes and 58 tRNA genes were predicted from the genome sequence. The G+C content of strain R798 T calculated from the draft whole genome sequence was 63.3 mol%, which was within the range (62.6 to 66.7 mol%) of the G+C contents of Massilia members [1–13]. The draft genome sequence of strain R798 T was deposited to GenBank with the accession number JAFBIL000000000.…”

Section: Genome Featuresmentioning

confidence: 90%

Massilia soli sp. nov., isolated from soil

Baek

Ruan

et al. 2022

International Journal of Systematic and Evolutionary Microbiology

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A Gram-stain-negative, catalase- and oxidase-positive and aerobic bacterium, designated strain R798T, was isolated from soil in South Korea. Cells were motile rods by means of a single polar flagellum. Growth of strain R798T was observed at 15–35 °C (optimum, 25–30 °C), pH 5.0–8.0 (optimum, 6.0) and 0–1.5 % NaCl (optimum, 0.3 %). Strain R798T contained ubiquinone-8 as the sole isoprenoid quinone, summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c) and C16 : 0 as the major fatty acids and phosphatidylglycerol and phosphatidylethanolamine as the major polar lipids. The DNA G+C content of strain R798T calculated from the whole genome sequence was 63.3 mol%. Phylogenetic analyses based on the 16S rRNA gene and whole genome sequences revealed that strain R798T formed a distinct phyletic lineage within the genus Massilia . Strain R798T was most closely related to Massilia eurypsychrophila B528-3T with a 98.0 % 16S rRNA gene sequence similarity. Average nucleotide identity and digital DNA–DNA hybridization values between strain R798T and the type strain of M. eurypsychrophila were 79.2 and 22.7 %, respectively. Based on the phenotypic, chemotaxonomic and molecular analyses, strain R798T represents a novel species of the genus Massilia , for which the name Massilia soli sp. nov. is proposed. The type strain is R798T (=KACC 22114T=JCM 34601T).

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Section: Genome Featuresmentioning

confidence: 90%

Massilia soli sp. nov., isolated from soil

Baek

Ruan

et al. 2022

International Journal of Systematic and Evolutionary Microbiology

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“… *Different results were reported by Zhang et al [50]; La Scola et al [4]; Kämpfer et al [11]; Gallego et al [5]. …”

Section: Physiology and Chemotaxonomymentioning

confidence: 91%

“… *Different results were reported by Zhang et al [50]; La Scola et al [4]; Kämpfer et al [11]; Gallego et al [5]. Data taken from: a , Zhang et al [50]; b , La Scola et al [4]; c , Kämpfer et al [11]; d , Gallego et al [5]. …”

Section: Physiology and Chemotaxonomymentioning

confidence: 96%

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Massilia puerhi sp. nov., isolated from soil of Pu-erh tea cellar

Yang

Zhou

Wang

et al. 2021

International Journal of Systematic and Evolutionary Microbiology

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A Gram-reaction-negative, yellow-pigmented, non-spore-forming rod, aerobic, motile bacterium, designated SJY3T, was isolated from soil samples collected from a Pu-erh tea cellar in Bolian Pu-erh tea estate Co. Ltd. in Pu'er city, Yunnan, south-west China. Phylogenetic analysis based on 16S rRNA gene sequences showed that the isolate belonged to the genus Massilia . The closest phylogenetic relative was Massilia arenae CICC 24458T (99.5 %), followed by M. timonae CCUG45783T (97.9 %), M. oculi CCUG43427AT (97.8 %), and M. aurea DSM 18055T (97.8 %). The major fatty acids were C16 : 0 and C16 : 1 ω7c and/or C16 : 1 ω6c. The major respiratory quinone was ubiquinone Q-8 and the major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine. Genome sequencing revealed a genome size of 5.97 M bp and a G+C content of 65.4 mol%. Pairwise determined whole genome average nucleotide identity (gANI) values and digital DNA–DNA hybridization (dDDH) values were all below the threshold. Although the 16S rRNA gene similarity of stain SJY3T and Massilia arenae CICC 24458T was more than 99 %, the gANI, dDDH values and genomic tree clearly indicated that they were not of the same species. In summary, strain SJY3T represents a new species, for which we propose the name Massilia puerhi sp. nov. with the type strain SJY3T (=CGMCC 1.17158T=KCTC 82193T).

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“…The Qaidam Basin is located in the northeast Qinghai-Tibet Plateau, which is a very harsh environment with an arid climate and high solar radiation. These special characteristics have resulted in a large number of new untapped microbial resources in the region [14][15][16].…”

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confidence: 99%

Mesobacillus harenae sp. nov., isolated from the sandy soil of a cold desert

Zhang

Yang²,

Chen

et al. 2021

International Journal of Systematic and Evolutionary Microbiology

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A bacterial strain, designated Y40T, was isolated from sandy soil sampled on the Qinghai–Tibet Plateau. A polyphasic study confirmed the affiliation of the strain with the genus Mesobacillus . Strain Y40T was found to be an aerobic, Gram-stain-positive, motile and rod-shaped bacterium. The strain grew at 10–42 °C, pH 6–9 and with 0–2 % (w/v) NaCl. The diagnostic amino acid was meso-diaminopimeilic acid. MK7 was predominant menaquinone, and iso-C15:0, iso-C17:1 ω10c and anteiso-C15:0 were the major fatty acids. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and an unidentified lipid. The DNA G+C content was 40.6 mol%. Based on he results of 16S rRNA gene sequence analysis, strain Y40T was phylogenetically closely related to Mesobacillus zeae JJ-247T and Mesobacillus foraminis CV53T, with similarities of 98.0 and 97.7 %, respectively. The average nucleotide identity (ANIb) values between strain Y40T and Mesobacillus zeae JJ-247T and Mesobacillus foraminis CV53T were 69.9 and 70.0 %, respectively. Based on the morphological, physiological, and chemotaxonomic data, it is proposed that strain Y40T (=CICC 24459T=JCM 32794T) should be classified into the genus Mesobacillus as Mesobacillus harenae sp. nov.

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Massilia arenae sp. nov., isolated from sand soil in the Qinghai–Tibetan Plateau

Cited by 11 publications

References 41 publications

Massilia soli sp. nov., isolated from soil

Massilia soli sp. nov., isolated from soil

Massilia puerhi sp. nov., isolated from soil of Pu-erh tea cellar

Mesobacillus harenae sp. nov., isolated from the sandy soil of a cold desert

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