Mapping of A1 conferring resistance to the aphid Amphorophora idaei and dw (dwarfing habit) in red raspberry (Rubus idaeus L.) using AFLP and microsatellite markers

Sargent, Daniel J.; Fernández-Fernández, Felicidad; Rys, A.; Knight, V.H.; Simpson, D. W.; Tobutt, K. R.

doi:10.1186/1471-2229-7-15

Cited by 51 publications

(40 citation statements)

References 21 publications

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“…Several genetic maps have been constructed for red raspberry using a variety of marker types, including amplified fragment length polymorphic (AFLP), genomic simple sequence repeat (SSR), expressed sequence tag-SSR (EST-SSR), and gene-based markers (Graham et al 2004(Graham et al , 2006Sargent et al 2007;Woodhead et al 2008Woodhead et al , 2010. The first published genetic linkage map of Rubus was developed using AFLP and SSR markers in progeny from an intraspecific cross between elite cultivars of red raspberry 'Latham' and 'Glen Moy'.…”

Section: ] Andmentioning

confidence: 99%

“…Base chromosome numbers (x) are indicated. The phylogeny illustrates the relative distances between the sub-families Rosoideae and Spiraeoideae, and between the genera within each sub-family A second genetic linkage map that consists of seven LG constructed of 95 AFLP, 22 SSR, and 2 gene-based markers, was developed from another intra-specific cross between elite cultivars of red raspberry 'Malling Jewel' and 'Malling Orion' (Sargent et al 2007). While this map is considered saturated, the high number of AFLP markers limits marker transferability.…”

Section: ] Andmentioning

confidence: 99%

“…Our map is composed entirely of markers derived from non-anonymous DNA sequences, the majority of which are EST-based or gene-derived. As this map was developed from an inter-specific progeny with 'Latham' as a parent, it can be aligned with existing R. idaeus 'Latham'-based maps (Graham et al 2004(Graham et al , 2006Kassim et al 2009;McCallum et al 2010;Sargent et al 2007;Woodhead et al 2008) to obtain a wider view of genetic diversity in Rubus. Overall, our map aligns with the existing maps.…”

Section: Inter-specific Rubus Genetic Map Constructionmentioning

confidence: 99%

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Construction of black (Rubus occidentalis) and red (R. idaeus) raspberry linkage maps and their comparison to the genomes of strawberry, apple, and peach

Bushakra

Stephens²,

Atmadjaja

et al. 2012

Theor Appl Genet

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The genus Rubus belongs to the Rosaceae and is comprised of 600-800 species distributed world-wide. To date, genetic maps of the genus consist largely of non-transferable markers such as amplified fragment length polymorphisms. An F(1) population developed from a cross between an advanced breeding selection of Rubus occidentalis (96395S1) and R. idaeus 'Latham' was used to construct a new genetic map consisting of DNA sequence-based markers. The genetic linkage maps presented here are constructed of 131 markers on at least one of the two parental maps. The majority of the markers are orthologous, including 14 Rosaceae conserved orthologous set markers, and 60 new gene-based markers developed for raspberry. Thirty-four published raspberry simple sequence repeat markers were used to align the new maps to published raspberry maps. The 96395S1 genetic map consists of six linkage groups (LG) and covers 309 cM with an average of 10 cM between markers; the 'Latham' genetic map consists of seven LG and covers 561 cM with an average of 5 cM between markers. We used BLAST analysis to align the orthologous sequences used to design primer pairs for Rubus genetic mapping with the genome sequences of Fragaria vesca 'Hawaii 4', Malus × domestica 'Golden Delicious', and Prunus 'Lovell'. The alignment of the orthologous markers designed here suggests that the genomes of Rubus and Fragaria have a high degree of synteny and that synteny decreases with phylogenetic distance. Our results give unprecedented insights into the genome evolution of raspberry from the putative ancestral genome of the single ancestor common to Rosaceae.

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Section: ] Andmentioning

confidence: 99%

Section: ] Andmentioning

confidence: 99%

Section: Inter-specific Rubus Genetic Map Constructionmentioning

confidence: 99%

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Construction of black (Rubus occidentalis) and red (R. idaeus) raspberry linkage maps and their comparison to the genomes of strawberry, apple, and peach

Bushakra

Stephens²,

Atmadjaja

et al. 2012

Theor Appl Genet

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“…Transmission of these viruses requires as little as a two minute feeding period on a healthy host plant (McMenemy et al 2009). Over the last 40-50 years, there have been extensive efforts to control this aphid by breeding resistant varieties (Sargent et al 2007) but these resistant varieties have applied strong selection pressure over many years. This, combined with the short generation time of the aphid, has caused the gradual evolution of aphid biotypes which are able to overcome plant resistance (McMenemy et al 2009).…”

Section: Introductionmentioning

confidence: 99%

Combining plant resistance and a natural enemy to control Amphorophora idaei

Mitchell

Johnson²,

Gordon³

et al. 2009

BioControl

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The European large raspberry aphid Amphorophora idaei Börner (Homoptera: Aphididae) is a virus vector of at least four plant virus complexes making it the most important aphid pest of raspberries in Northern Europe. An approach combining a bottom-up control (plant resistance) and a top-down control (an aphid parasitoid) using Aphidius ervi Haliday (Hymenoptera: Aphidiinae) was investigated in the laboratory. Aphid performance (pre-reproductive period, total reproductive output, lifespan and r m ) were compared when reared on both a susceptible cultivar and a resistant cultivar with significantly poorer performance on the resistant cultivar. Parasitoid attack behaviour increased with aphid density on both cultivars, but was significantly lower on resistant plants than susceptible plants. Aphids showed a greater tendency to drop from the plant when feeding on resistant plants compared with susceptible plants. The significance of the results is discussed in the context of possible control of the aphid using these combined methods.

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“…Therefore, different molecular markers are very useful to distinguish between genotypes and for study of genetic diversity or relatedness. Markers such as RAPD (Graham and McNicoll, 1995), AFLP (Graham et al, 2004;Sargent et al, 2007;Miyashita et al, 2015), and SSR (Graham et al, 2002;2004;Badjakov et al, 2005;Stafne et al, 2005;Lopes et al, 2006;Sargent et al, 2007) have been applied also for Rubus species. Combined germplasm characterisation including both phenotypical and DNA-based methods is the most effective approach to compensate the shortcomings of each method.…”

Section: Introductionmentioning

confidence: 99%

Evaluation of Red Raspberry Cultivars Used for Breeding and Commercial Growing in the Baltic Region

Lācis

Kota-Dombrovska

Strautina

2017

Proceedings of the Latvian Academy of Sciences. Section B. Natural, Exact, and Applied Sciences.

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The structure of raspberry cultivars and genetic resources in the Baltic countries have been influenced by the historical political situation in the 20th century and climatic conditions, especially winterhardiness. The genetic resources consist of some old European and American cultivars, but mostly of cultivars and hybrids bred in Russia. Currently, targeted breeding programmes are active only in Estonia and Latvia, which aim to develop winterhardy, disease-resistant cultivars, well adapted to the local climate. Therefore, parent material for hybridisation has been chosen from local advanced hybrids and introduced cultivars suitable to the regional climatic conditions. The aim of the study was to estimate the level of genetic diversity of Rubus germplasm and assess inter-specific and intra-specific relationships using phenotypical characterisation and molecular markers. Forty one Rubus genotypes were evaluated by 41 phenotypical traits and 15 previously described SSR markers. Both characterisation approaches discovered high correspondence with pedigree and a low level of diversity. A limited amount of the diversity of raspberry genetic material has been used in various breeding programmes, despite their broad geographical origin. The obtained results indicate the need for including local wild R. idaeus plant material into breeding programmes.

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Mapping of A1 conferring resistance to the aphid Amphorophora idaei and dw (dwarfing habit) in red raspberry (Rubus idaeus L.) using AFLP and microsatellite markers

Cited by 51 publications

References 21 publications

Construction of black (Rubus occidentalis) and red (R. idaeus) raspberry linkage maps and their comparison to the genomes of strawberry, apple, and peach

Construction of black (Rubus occidentalis) and red (R. idaeus) raspberry linkage maps and their comparison to the genomes of strawberry, apple, and peach

Combining plant resistance and a natural enemy to control Amphorophora idaei

Evaluation of Red Raspberry Cultivars Used for Breeding and Commercial Growing in the Baltic Region

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