Mapping and Genetic Structure Analysis of the Anthracnose Resistance Locus Co-1HY in the Common Bean (Phaseolus vulgaris L.)

Chen, Mingli; Wu, Jing; Wang, Lanfen; Mantri, Nitin; Zhang, Xiaoyan; Zhu, Zhendong; Wang, Shumin

doi:10.1371/journal.pone.0169954

Cited by 36 publications

(42 citation statements)

References 58 publications

(67 reference statements)

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“…Some NBS genes showed significant expression differences between resistant and susceptible lines, such as Phvul.004G008400 and Phvul.011G192400 for ANT disease and Phvul.002G129900 and Phvul.011G200900 for CBB disease. Differences between genotypes were also observed in other crops, such as Sr35 in wheat (Saintenac et al, 2013 ), Bol016084 in cabbage (Kim et al, 2015 ), and Phvul.001G243700 in the common bean (Chen et al, 2017 ). In addition, some genes were found to be highly induced in resistant lines after pathogen infection.…”

Section: Discussionmentioning

confidence: 91%

Genome-Wide Association Study Identifies NBS-LRR-Encoding Genes Related with Anthracnose and Common Bacterial Blight in the Common Bean

Zhu

Wang

et al. 2017

Front. Plant Sci.

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Nucleotide-binding site and leucine-rich repeat (NBS-LRR) genes represent the largest and most important disease resistance genes in plants. The genome sequence of the common bean (Phaseolus vulgaris L.) provides valuable data for determining the genomic organization of NBS-LRR genes. However, data on the NBS-LRR genes in the common bean are limited. In total, 178 NBS-LRR-type genes and 145 partial genes (with or without a NBS) located on 11 common bean chromosomes were identified from genome sequences database. Furthermore, 30 NBS-LRR genes were classified into Toll/interleukin-1 receptor (TIR)-NBS-LRR (TNL) types, and 148 NBS-LRR genes were classified into coiled-coil (CC)-NBS-LRR (CNL) types. Moreover, the phylogenetic tree supported the division of these PvNBS genes into two obvious groups, TNL types and CNL types. We also built expression profiles of NBS genes in response to anthracnose and common bacterial blight using qRT-PCR. Finally, we detected nine disease resistance loci for anthracnose (ANT) and seven for common bacterial blight (CBB) using the developed NBS-SSR markers. Among these loci, NSSR24, NSSR73, and NSSR265 may be located at new regions for ANT resistance, while NSSR65 and NSSR260 may be located at new regions for CBB resistance. Furthermore, we validated NSSR24, NSSR65, NSSR73, NSSR260, and NSSR265 using a new natural population. Our results provide useful information regarding the function of the NBS-LRR proteins and will accelerate the functional genomics and evolutionary studies of NBS-LRR genes in food legumes. NBS-SSR markers represent a wide-reaching resource for molecular breeding in the common bean and other food legumes. Collectively, our results should be of broad interest to bean scientists and breeders.

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Section: Discussionmentioning

confidence: 91%

Genome-Wide Association Study Identifies NBS-LRR-Encoding Genes Related with Anthracnose and Common Bacterial Blight in the Common Bean

Zhu

Wang

et al. 2017

Front. Plant Sci.

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“…Alternatively, our material showed anthracnose resistance to race 2047 and resistance can easily be transferred to local commercially grown cultivars because these cultivars are adapted to the local environment and do not have limitations as those of G2333 and other differential cultivars. Over past few years, new anthracnose resistance genes were identified and mapped from diverse anthracnose resistant genotypes ( Gonçalves-Vidigal et al, 2011 ; Richard et al, 2014 ; Lacanallo and Gonçalves-Vidigal, 2015 ; Trabanco et al, 2015 ; Chen et al, 2017 ; de Lima Castro et al, 2017 ). We expect our anthracnose resistant common bean material may contain diverse anthracnose resistance genes as the C. lindemuthianum virulence spectrum in NW region is different than the US, France and Canada ( Padder et al, 2017 ).…”

Section: Discussionmentioning

confidence: 99%

“…Seventeen of these genes are numbered from Co-1 to Co-17 , however many anthracnose resistance genes have alphabets as suffix such as Co-x , Co-y , Co-w , Co-Pa , Co-z , Co-1 HY , and are mapped to bean chromosomes where numbered genes are located ( Zuiderveen et al, 2016 ). Co-1 and its alleles, Co-14 , Co-x , Co-w , Co-1 HY , Co-1 65-X , Co-1 73-X , and Co-Pa anthracnose resistance genes are mapped to the distal end of bean chromosome Pv01 ( Melotto and Kelly, 2000 ; Geffroy et al, 2008 ; Gonçalves-Vidigal et al, 2011 ; Campa et al, 2014 ; Richard et al, 2014 ; Chen et al, 2017 ; de Lima Castro et al, 2017 ). Five anthracnose resistance genes ( Co-u , CoPv02c 3-X , CoPv02c 7-X , CoPv02c 19-X , and CoPv0c 2449-X ) are mapped to Pv02 ( Kelly et al, 2003 ; Campa et al, 2014 ).…”

Section: Introductionmentioning

confidence: 99%

“…Genome wide association studies (GWAS) showed association of a SNP and SSR marker located at Pv10 with anthracnose resistance ( Zuiderveen et al, 2016 ; Wu et al, 2017 ). Access to P. vulgaris whole genome ( Schmutz et al, 2014 ; Vlasova et al, 2016 ) and SNP Bean Chips ( Hyten et al, 2010 ; Song et al, 2015 ) has resulted in the fine mapping of many economically important traits in beans including anthracnose resistance ( Richard et al, 2014 ; Burt et al, 2015 ; Gonzalez et al, 2015 ; Oblessuc et al, 2015 ; Padder et al, 2016 ; Zuiderveen et al, 2016 ; Chen et al, 2017 ; de Lima Castro et al, 2017 ; Mungalu et al, 2020 ).…”

Section: Introductionmentioning

confidence: 99%

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North-Western Himalayan Common Beans: Population Structure and Mapping of Quantitative Anthracnose Resistance Through Genome Wide Association Study

et al. 2020

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Common bean ( Phaseolus vulgaris L.) is an important legume crop of north-western (NW) Himalayan region and the major disease that causes catastrophic loss to the crop is anthracnose, which is caused by Colletotrichum lindemuthianum . The pathogen is highly diverse and most of the commercial cultivars are susceptible to different races prevalent in the region. The lack of information on the genomic regions associated with anthracnose resistance in NW Himalayan common bean population prompted us to dissect Quantitative Resistance Loci (QRLs) against major anthracnose races. In this study, 188 common bean landraces collected from NW region were screened against five important anthracnose races and 113 bean genotypes showed resistance to one or multiple races. Genotyping by sequencing (GBS) was performed on a panel of 192 bean lines (4 controls plus 188 Indian beans) and 22,589 SNPs were obtained that are evenly distributed. Population structure analysis of 192 bean genotypes categorized 188 Indian beans into two major clusters representing Andean and Mesoamerican gene pools with obvious admixtures. Many QRLs associated with anthracnose resistance to Indian C. lindemuthianum virulences (race 3, 87, and 503) are located at Pv04 within the gene models that encode typical resistance gene signatures. The QRLs associated with race 73 are located on Pv08 and overlaps with Co-4 anthracnose resistance gene. A SNP located at distal end of Pv11 in a gene model Phvul.011G202300 which encodes a LRR with a typical NB-ARC domain showed association with race 73 resistance. Common bean genomic regions located at Pv03, Pv09, and Pv11 showed association with resistance to anthracnose race 2047. The present study showed presence of many novel bean genomic regions associated with anthracnose resistance. The presence of Co-4 and Co-2 genes in our material is encouraging for breeding durable anthracnose resistant cultivars for the region.

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“…Field losses may be up to 100% under climatic and soil conditions favourable to the disease (Bassanezi et al, 2001;Lopes and Berger, 2001;Paulert et al, 2009;Tullu et al, 2003). The production and the use of anthracnose resistant seeds is one control and management measure that is effective, safe and cheap in dealing with the disease (Chen et al, 2017).…”

Section: Background Informationmentioning

confidence: 99%

Morphological traits associated with anthracnose (Colletotrichum lindemuthianum) resistance in selected common bean (Phaseolus vulgaris L.) genotypes

Kiptoo¹,

Kinyua²,

Matasyoh³

et al. 2020

Afr. J. Plant Sci.

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Common bean is among the most important legume crop for protein source in people's diet globally and including Kenya. Anthracnose is a common disease of legumes that causes yield loss of up to 90-100%. The aim of the study is to investigate the morphological traits associated with anthracnose resistance in selected common bean genotypes in Kenya. The study was done in three varied agroecological zones; University of Eldoret, Bungoma and Busia. Fifteen genotypes were evaluated on field experiment to ascertain morphological traits associated with anthracnose resistance. Field experiment was done in a random complete block design. Data were collected on morphological traits and subjected to analysis of variance in SAS version 9.1. The genotypes, Ciankui, Tasha, KK15, KK8, Miezi mbili and Chelalang showed morphological traits that were significantly (P ≤ 0.05) associated with anthracnose resistance, and also with high grain yields of 1.5 to 2.0 t/ha. Morphological traits associated with common bean anthracnose resistance included Leaf width, leaf length, length of fifth internode of the stems, bracteolate size classification and flower colour. It is recommended that management of anthracnose by use of resistant common bean genotype seeds is essential to provide increased bean yields globally and in Kenya.

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Mapping and Genetic Structure Analysis of the Anthracnose Resistance Locus Co-1HY in the Common Bean (Phaseolus vulgaris L.)

Cited by 36 publications

References 58 publications

Genome-Wide Association Study Identifies NBS-LRR-Encoding Genes Related with Anthracnose and Common Bacterial Blight in the Common Bean

Genome-Wide Association Study Identifies NBS-LRR-Encoding Genes Related with Anthracnose and Common Bacterial Blight in the Common Bean

North-Western Himalayan Common Beans: Population Structure and Mapping of Quantitative Anthracnose Resistance Through Genome Wide Association Study

Morphological traits associated with anthracnose (Colletotrichum lindemuthianum) resistance in selected common bean (Phaseolus vulgaris L.) genotypes

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