Rabbit muscle phosphofructokinase, spin-labelled at its most reactive thiol group, has an electron spin resonance spectrum which is very sensitive to the binding of substrates and allosteric effectors. The spectral changes have been interpreted in terms of a concerted allosteric transition between two conformational states with non-exclusive binding of effectors. On this basis MgATP, fructose 6-phosphate plus ATP, and NH: ions behave as potent positive effectors, inorganic phosphate, sulphate, AMP, fructose 6-phosphate and fructose 1,6-bisphosphate are less potent activators, and free ATP and H+ ions are negative effectors, in agreement with the kinetic behaviour, but citrate behaves anomalously. In addition, the allosteric equilibrium can be displaced towards the inhibited state by selectively modifying two further thiol groups.Strong positive cooperativity occurs under suitable conditions with ATP, metal-ATP and fructose 6-phosphate. Biphasic changes of conformation, attributed to binding at the catalytic and inhibitory sites, have been observed in titrations with ATP. The differentiation of the two ATP binding sites arises in the presence of fructose 6-phosphate because of a distinct concerted effect on conformation between the two substrates at the active site. A similar effect occurs between ATP and citrate. Other heterotropic effects are more consistent with simple models ; phosphates favour the binding, and reduce the cooperativity, of fructose 6-phosphate and metal-ATP, whereas excess ATP and H+ ions antagonise the binding and increase the cooperativity of fructose 6-phosphate.The observations are related to existing kinetic and binding studies where possible. Anomalous features of the behaviour suggest that the model should be regarded only as a first approximation. Nearly all the evidence for different conformational states and for cooperative ligand interactions in phosphofructokinase to date has come from kinetic [1-41 or other [5,6] indirect techniques; of the equilibrium binding studies [7-91 only the most recent [9] has clearly demonstrated cooperativity. The correlation is also poor between kinetic data and binding data on the multiple binding sites for nucleotides, e.g. the catalytic and inhibitory ATP sites. Because of the kinetic mechanism, which probably involves a random-order sequential addition of substrates [10,11] as well as observations of transient effects [12-141 there is a possibility that the nonhyperbolic kinetic responses of phosphofructokinase to its substrates may arise from the steady-state kinetic behaviour rather than from cooperativity between sites at equilibrium [15-171. The available information is thus insufficient to distinguish between Abbreviations. ESR, electron spin resonance; Fru-6-P, fructose 6-phosphate; Nbs,, 5,5'-dithiobis(2-nitrobenzoic acid).Enzyme. Phosphofructokinase (EC 2.7.1.11).the possibilities, although it is necessary to postulate that different conformations, and separate allosteric sites for effectors other than substrates, exist. Attempts to formu...