Neutron powder diffraction experiments were carried out on the magnetoelectric compound series (Co 4−x Mn x )Nb 2 O 9 (x = 0, 1, 2, 3, 3.5, 3.9, 3.95 and 4) from base temperature to above their Néel temperatures. Their magnetic structures were analysed by using the irreducible representation analysis and Rietveld refinement method. Similar to Co 4 Nb 2 O 9 , the compounds with x ⩽ 3.9 have noncollinear in-plane magnetic structures (Γ6) with magnetic moments lying purely in the ab plane with certain canting angles. Mn 4 Nb 2 O 9 has a collinear antiferromagnetic structure (Γ2) with magnetic moments aligning along the c axis. The compound of x = 3.95 shows two magnetic phases in the magnetization, which was confirmed to have the Γ2 magnetic structure above 60 K and develop a second Γ6 local phase in addition to the main Γ2 phase due to doping. This study indicates 2.5 at% Co 2+ doping is sufficient to alter the collinear easy-axis magnetic structure of Mn 4 Nb 2 O 9 into the noncollinear easyplane magnetic structure, which is attributed to the large easy-plane anisotropy of Co 2+ and relative small Ising-like anisotropy of Mn 2+ . The doping effects on the Néel temperature and occupancy are also discussed.