SYNOPSISThe anisotropic self-diffusion coefficient of 7Li+ ( I = 3 / 2 ) counterions has been studied in hydrated, macroscopically oriented Li-( B )DNA fibers a t relatively high water contents, corresponding to approximate DNA-DNA helix axis distances of 22-35 A, using the pulsed field gradient nrnr spin-echo method. Self-diffusion coefficients parallel ( Dll ) and perpendicular (D,) to the DNA helix axis increase with increasing salt content and with increasing DNA-DNA helix axis distance. The observed anisotropy Dll/Dl decreases from 1.6 to 1.2 with the DNA-DNA separation increasing from 22 to 35 A in the salt-free sample. This result can be understood by the obstruction effect caused by the DNA molecules themselves.The values of the Li' self-diffusion coefficients in the most water-rich system with no added salt (corresponding to an approximate distance of 35 A between the DNA helix axes) were Dll -1.15 X lo-'' m2 5-l and DL -0.98 X 10-l' m2 s -' , compared to 9.14 X lo-'' m2 s-l for the diffusion of Li+ in an aqueous solution of LiCl ( -2.1M). The possible occurrence of restriction effects in the DNA fibers have also been studied by determining the self-diffusion coefficient at different effective diffusion times. The self-diffusion coefficient of Li' in the sample with the largest DNA-DNA helix axis distance seems to be independent of the effective diffusion time, which indicates that the lithium ions are not trapped within impermeable barriers. The possibility of diffusion through permeable barriers has also been investigated, and is discussed. 0 1994 John Wiley & Sons, Inc.
INTRODUCTIONDouble-helical DNA in aqueous solution is a highly charged polyelectrolyte and will therefore interact strongly with the neutralizing counterions and any added salt. These long-range electrostatic forces gives rise to considerable salt effects on many physical properties of DNA in solution.' Ion-DNA interactions have been extensively studied by quadrupolar ion nmr in dilute or semidilute isotropic solution~.'-~ These experiments can often be successfully interpreted by polyelectrolyte theory based on the Poisson-Boltzmann ( PB ) cylindrical cell model or the simpler counterion condensation theory.' Of special interest in the present context is a study3 where the counterion self-diffusion of Li+ in aqueous solutions of Li-DNA/ LiCl was measured Biopolymers, Vol. 34, 1605-1614 (1994) with the nmr method and found to be well described by a diffusion model based on the cylindrical PB equation.Naturally occurring DNA is most often arranged in a closely packed and ordered form, as e.g., in chromosomes, sperm heads, virus capsids, and bacterial nucleoids.6 This fact makes it interesting to study the counterion-DNA interactions in ordered DNA. After the pioneering work of Edzes et al.,7 a number of publications, where nmr studies of the counterions in oriented DNA are discussed, have been p~blished.~-'~ Among these, a previous study from this laboratory10 where the self-diffusion of Li' was studied in fibers of oriented B-DNA ...