IntroductionRecently, polymorphisms in macrophage inhibitory cytokine-1 (MIC1) and interleukin 1 receptor antagonist (IL1RN) were identified to be associated with prostate cancer risk (1-3). MIC-1 is a divergent member of the transforming growth factor-h superfamily of cytokines. In the Cancer Prostate in Sweden study, the nonsynonymous MIC1 H6D polymorphism was associated with a lowered risk of prostate cancer [CG versus CC; odds ratio (OR) IL1RN inhibits the proinflammatory response of interleukin 1-a and interleukin 1-h cytokines. The IL1RN haplotype (ATGC) was significantly associated with prostate cancer risk in the Cancer Prostate in Sweden study (homozygous carriers versus noncarriers; OR, 1.6; 95% CI, 1.2-2.2), with larger effects observed among advanced disease (homozygous carriers versus noncarriers; OR, 1.8; 95% CI, 1.3-2.5; ref. 3). To further investigate these previous reports, we comprehensively surveyed the common genetic variation of MIC1 and IL1RN and tested whether inherited differences at these loci predispose men to advanced prostate cancer.
Materials and MethodsStudy Subjects. This study includes 506 advanced incident prostate cancer cases and 506 controls from the major medical institutions in Cleveland, Ohio. Advanced prostate cancer cases were defined as having either a Gleason score z7, tumor-node-metastasis stage zT 2c , or prostate-specific antigen at diagnosis >10 ng/mL. Controls were frequency matched to cases by age (within 5 years), racial/ethnic group, and medical institution. Detailed information about this study has been reported previously (4). Institutional Review Board approval was obtained from the participating medical institutions, and informed consent was obtained from all study participants.Genetic Characterization and Tag Single Nucleotide Polymorphism Selection. We determined the genetic structure of MIC1 and IL1RN by using publicly available genotype data from the International HapMap project 3 (5). For MIC1, we evaluated 12 single nucleotide polymorphisms (SNP; minor allele frequency, >5% among Caucasian pedigrees; average density, 1 SNP/477 bps) that spanned f3 kbs upstream of the transcription start site and f2 kb downstream of the 3 ¶ untranslated region. For IL1RN, we examined 41 SNPs (average density, 1 SNP/440 bps) that spanned f1 kb upstream and f700 bps downstream. We did not capture the genetic variation of African populations because our sample size did not have sufficient power for African American -specific analyses.To capture the common genetic variation for MIC1 and IL1RN, we identified tag SNPs using the Tagger software 4 (6). We selected 6 and 7 tag SNPs for MIC1 and IL1RN, respectively, which had a minimum r 2 > 0.8 with the unmeasured SNPs for each gene (Supplementary Table A). For MIC1, we ''forced in'' the previously associated H6D polymorphism (rs1058587) to be selected as a tag SNP. The 6 tag SNPs for MIC1 and 7 tag SNPs for IL1RN captured all 12 and 41 SNPs, respectively, with an average r 2 of 98.8% and 95.9%, respectively.Genotyping. Genotyp...