Applications of deep learning (DL) in autonomous vehicle (AV) projects have gained increasing interest from both researchers and companies. This has caused a rapid expansion of scientific production on DL-AV in recent years, encouraging researchers to conduct systematic literature reviews (SLRs) to organize knowledge on the topic. However, a critical analysis of the existing SLRs on DL-AV reveals some methodological gaps, particularly regarding the use of bibliometric software, which are powerful tools for analyzing large amounts of data and for providing a holistic understanding on the structure of knowledge of a particular field. This study aims to identify the strategic themes and trends in DL-AV research using the Science Mapping Analysis Tool (SciMAT) and content analysis. Strategic diagrams and cluster networks were developed using SciMAT, allowing the identification of motor themes and research opportunities. The content analysis allowed categorization of the contribution of the academic literature on DL applications in AV project design; neural networks and AI models used in AVs; and transdisciplinary themes in DL-AV research, including energy, legislation, ethics, and cybersecurity. Potential research avenues are discussed for each of these categories. The findings presented in this study can benefit both experienced scholars who can gain access to condensed information about the literature on DL-AV and new researchers who may be attracted to topics related to technological development and other issues with social and environmental impacts.