Luteimonas gilva sp. nov., isolated from farmland soil

Luo, Xiong‐Jian; An, Lijin; Zong, Yuanyuan; Wang, Mengjie; Wang, Gejiao; Li, Mingshun

doi:10.1099/ijsem.0.004197

Cited by 14 publications

(20 citation statements)

References 28 publications

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“…The quality of genome was evaluated using CheckM [32], which showed that the assembled genome completeness value was 100.0 % and the contamination was 0.69 %, thereby meeting the standards of genome data [33]. The genomic DNA G+C content was 69.3 mol%, which is in the range of genomic DNA G+C contents of the genus Luteimonas (64.3–73.4 %) [2]. The AAI values are shown in Table S2.…”

Section: Genome Featurementioning

confidence: 99%

“…chenhongjianii 100111 T [7], L. terrae JCM 30122 T [45] and other strains in the genus Luteimonas [2].…”

Section: Physiology and Chemotaxonomymentioning

confidence: 99%

“…They have iso-C 15 : 0 and iso-C 17 : 1 ω 9 c as their major fatty acids, and Q-8 as the major respiratory quinone. The genomic DNA G+C contents are in the range of 64.3–73.4 mol% [2]. This genus currently contains 24 validly published species (https://lpsn.dsmz.de/genus/luteimonas) [3].…”

Section: Introductionmentioning

confidence: 99%

“…Several recently identified species include 'Luteimonas weifangensis' [4], 'Luteimonas granuli' [5], 'Luteimonas cellulosilyticus' [6], Luteimonas gilva [2], Luteimonas chenhongjianii [7], Luteimonas yindakuii [8] and Luteimonas lumbrici [9]. Luteimonas strains can be found in various habitats, such as bensulfuron-methyl contaminated watermelon and farmland soil, fresh water or wastewater treatment plants, sediment, food waste, wormcasts, rectal contents, and plant leaves or rhizosphere [2,[4][5][6][7][8][9][10][11][12][13][14][15]. A few Luteimonas strains have been found that can degrade cellulose [6], synthesize siroheme [2], enhance oil recovery [16], and enhance the rate of degradation of petroleum hydrocarbons in diesel-contaminated soil [17].…”

Section: Introductionmentioning

confidence: 99%

“…de/ genus/ luteimonas) [3]. Several recently identified species include 'Luteimonas weifangensis' [4], 'Luteimonas granuli' [5], 'Luteimonas cellulosilyticus' [6], Luteimonas gilva [2], Luteimonas chenhongjianii [7], Luteimonas yindakuii [8] and Luteimonas lumbrici [9]. Luteimonas strains can be found in various habitats, such as bensulfuron-methyl contaminated watermelon and farmland soil, fresh water or wastewater treatment plants, sediment, food waste, wormcasts, rectal contents, and plant leaves or rhizosphere [2,[4][5][6][7][8][9][10][11][12][13][14][15].…”

Section: Introductionmentioning

confidence: 99%

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Luteimonas deserti sp. nov., a novel strain isolated from desert soil

Huang

Shang

et al. 2021

International Journal of Systematic and Evolutionary Microbiology

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A Gram-stain-negative, non-motile, rod-shaped bacterial strain, named SJ-16T, was isolated from desert soil collected in Inner Mongolia, northern PR China. Strain SJ-16T grew at pH 6.0–11.0 (optimum, pH 8.0–9.0), 4–40 °C (optimum, 30–35 °C) and in the presence of 0–8 % (w/v) NaCl (optimum, 0–2 %). The strain was negative for catalase and positive for oxidase. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain SJ-16T clustered with Luteimonas chenhongjianii 100111T and Luteimonas terrae THG-MD21T, and had 98.8, 98.6, 98.3 and <97.9 % of 16S rRNA gene sequence similarity to strains L. chenhongjianii 100111T, L. terrae THG-MD21T, L. aestuarii B9T and all other type strains of the genus Luteimonas , respectively. The major cellular fatty acids were iso-C15 : 0, iso-C16 : 0, summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c) and summed feature 9 (C16 : 0 10-methyl and/or iso-C17 : 1 ω9c). Diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine were the major polar lipids, and ubiquinone-8 was the only respiratory quinone. The genomic DNA G+C content was 69.3 mol%. The digital DNA–DNA hybridization and average nucleotide identity values of strain SJ-16T to L. chenhongjianii 100111T, L. terrae THG-MD21T, L. rhizosphaerae 4-12T and L. aestuarii B9T were 36.9, 37.5, 24.0 and 21.1 %, and 80.9, 80.6, 80.7 and 76.3 %, respectively. Based on phenotypic, physiological and phylogenetic results, strain SJ-16T represents a novel species of the genus Luteimonas , for which the name Luteimonas deserti is proposed. The type strain is SJ-16T (=CGMCC 1.17694T=KCTC 82207T).

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Section: Genome Featurementioning

confidence: 99%

“…chenhongjianii 100111 T [7], L. terrae JCM 30122 T [45] and other strains in the genus Luteimonas [2].…”

Section: Physiology and Chemotaxonomymentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

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Luteimonas deserti sp. nov., a novel strain isolated from desert soil

Huang

Shang

et al. 2021

International Journal of Systematic and Evolutionary Microbiology

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Description and genome analysis of Luteimonas viscosa sp. nov., a novel bacterium isolated from soil of a sunflower field

Chen

Zhang

et al. 2022

Antonie van Leeuwenhoek

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Strain XBU10 T was isolated from a soil sample of a sun ower plot in Inner Mongolia, China. The isolate was a Gram-stain-negative, aerobic, non-motile, rod-shaped bacterium, and its colonies were bright yellow in colour. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain XBU10 T belonged to the genus Luteimonas of the family Lysobacteraceae and was most closely related to Luteimonas panaciterrae Gsoil 068 T (97.8%), Luteimonas marina FR1330 T (97.6%), Luteimonas aquatica RIB1-20 T (97.4%) and Luteimonas huabeiensis HB2 T (97.2%). Growth occurred at 4-40 ℃ (optimum, 28−30 ℃), with 0-5.0% (w/v) NaCl (optimum, 0.5%) and at pH 6.0-10.0 (optimum, pH 7.0−8.0). The chemotaxonomic characteristics of strain XBU10 T , which had Q-8 as its predominant quinone and iso-C 17:1 ω9c, iso-C 15:0 , iso-C 17:0 and iso-C 16:0 as its major fatty acids, were consistent with classi cation in the genus Luteimonas. The polar lipid pro le of strain XBU10 T comprised phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine, one unidenti ed phospholipid, two unidenti ed aminophospholipids and three unidenti ed polar lipids. The genome of strain XBU10 T was 4.17 Mbp with a G+C content of 69.9 mol%. Its genome sequence showed genes encoding alkaline phosphatase and catalase. Protein-coding genes related to carbohydrate-active enzymes were also observed. Average nucleotide identity (ANI) values between XBU10 T and other species of the genus Luteimonas were found to be low (ANIm < 88.0%, ANIb < 85.0% and OrthoANIu < 85.0%). Furthermore, digital DNA-DNA hybridization (dDDH) and average amino acid identity (AAI) values between strain XBU10 T and the closely related species ranged from 20.3 to 28.9% and from 64.2 to 82.3%, respectively. Based on the results of our phylogenetic, phenotypic, genotypic and chemotaxonomic analyses, it is concluded that strain XBU10 T represents a novel species within the genus Luteimonas, for which the name Luteimonas viscosa sp. nov. is proposed. The type strain is XBU10 T (=CGMCC 1.12158 T =KCTC 23878 T ).

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