Abstract:The rat carrying the rdw mutation (rdw rat) is a dwarf mutant with hypothyroidism that is caused by a single G to C transversion in the thyroglobulin gene. Therefore, the development of a simple method for molecular-based genotyping of this mutation has been problematic. We have developed a rapid and simple genotyping method that provides identification of both the rdw and wild-type allele. This polymerase chain reaction with an allele-specific primer (PCR-ASP) method amplifies only the specific allele, wild or mutant type, by using 3'-terminal mismatched primers that pair only with the respective alleles. This assay should be of value for rdw colony control and rapid discrimination of rdw/rdw, rdw/+ and +/+ rats. Key words: genotyping, rdw rat, thyroglobulin Therefore, genotyping by a molecular analytical method is indispensable for experiments on the rats before they show their phenotypes, such as characterization at preor post-natal stages and pre-implantation genetic diagnosis.The rdw mutation creates a restriction enzyme MboIsensitive site, which forms the basis of a previously developed method for molecular analysis [3]. Briefly, the region containing the rdw mutation is amplified by PCR, digested with MboI, and assayed by gel electrophoresis. Cleavage is indicative of the mutant allele, whereas wild-type alleles remain uncleaved. However, this PCR-RFLP (restriction fragment length polymorphism) assay can be problematic because failed or Tochigi, Japan The rat carrying the rdw mutation (rdw rat) was discovered in a closed colony of Wistar-Imamichi rats as a hereditary dwarf, and was established as an inbred strain [1]. The mutation is autosomal recessive [1] and causes hypothyroidism [2]. The gene responsible for this mutation encodes thyroglobulin, which is a key molecule in the biosynthesis of thyroid hormone, and the mutation is a G to C single nucleotide change (G6958C), resulting in a G2320R missense mutation in the acetylcholinesterase-like domain [3,4].For the ordinary breeding of rdw rats, it is necessary to intercross heterozygous rats or cross heterozygous female rats with thyroxine-treated homozygous male rats [5], due to the infertility of rdw rats of both sexes.